1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tattcatggttccaagtttcaactaaatatttcttatttcaaacatttgtatcgttaaggttaggctctgaacgccaagctactttgttttgattttcagAAACATTCAAGTTAAATGTAGAGCAAGGAAAGACTTATCATCTCCGTGTTATCAACGCGGCAGTGAATCTCATTCTCTTCTTCTCTGTTTCCCAACACAA
species | Glycine max |
transcript | GLYMA10G36320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCACTATCAATGGTCAACCCGGGGATCTGTTACCTTGCTCAAGTCCAG AAACATTCAAGTTAAATGTAGAGCAAGGAAAGACTTATCATCTCCGTGTTA
genomic: TCTCACTATCAATGGTCAACCCGGGGATCTGTTACCTTGCTCAAGTCCAGgtaatcatac ... tgattttcagAAACATTCAAGTTAAATGTAGAGCAAGGAAAGACTTATCATCTCCGTGTTA
tttgtatcgttaaggttaggctctgaacgccaagctactttgttttgattttcagAAACATTCAAGTTAAATGTAGAGCAAGGAAAGACTTATCATCTCCGTGTTATCAACGCGGCAGTGAATCTCATTCTCTTCTTCTCTGTTTCCCAACACAA
ttttgat putative branch site (score: 4)
ctttgtttt CT-rich tract
tttgttttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcatggttccaagtttcaactaaatatttcttatttcaaacatttgtatcgttaaggttaggctctgaacgccaagctactttgttttgattttcagAAACATTCAAGTTAAATGTAGAGCAAGGAAAGACTTATCATCTCCGTGTTATCAACGCGGCAGTGAATCTCATTCTCTTCTTCTCTGTTTCCCAACACAA
- - - tggttcc
- - - - - - - - - - - - - - - - - - - -caaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagcta