Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaaatcacctcagacttttcagttttatacaattttaaaaaactctcatactgtcatttttttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAGCTGAGGAAGAAGTTTGATGATGAGATCAGAAATGATAACTGGGGCTATT

Basic information

species Glycine max
transcript GLYMA10G35750.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35750.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os08g37320.1 (Oryza sativa), 3'ss of exon 4
-----------------------------------------gtaataaaaatcacct---cagacttttcagttttatacaattttaaaaaactctcatactgtcattttttt---ttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAGCTGAGGAAGAAGTTTGATGATGAGATCAGAAATGATAACTGGGGCTATT
                                          |   | | ||    |   ||  | |      || | |  |||||   |    ||   ||    | || ||    |  |||||||||  |||| || ||||| |||||||| ||||||| ||| ||||||||| | | | ||||||| |||||||| ||| | || || ||||||||||| |
gtgaggatgatctctggcgaaacttgtatattgcagtccatttgtcagagattggttgtgcatgcatccattattaagagcatttttccatttgctttaacatatacttgttcacgtatacagAAAAATATCAGCACAATGACAGCAGATGAATACTTTGCAAAGCATCCTGAGGTCAAGCAGAAGTTCGATGATGAAATCCGTAACGACAACTGGGGCTACT

upper sequence: GLYMA10G35750.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G157018_T01 (Zea mays), 3'ss of exon 4
--------------------gtaataaaaatca--cctcagacttttcagt-tttata--caattttaaaaa------actctcatactgtcatttttttttca------cagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAGCTGAGGAAGAAGTTTGATGATGAGATCAGAAATGATAACTGGGGCTATT
                     | ||| || ||      |||| |  | ||  |||||   || ||||||| |      || ||    || | || | || || |      ||||||||| ||||||| ||||| |||||||| |||||||| ||  | ||||| || |||||||||||||| ||||| ||| | || ||||||||||| ||||
gtaggggatattcttcagtgttcatataattccatttccagaatcattagcatttatcgtcatttttaaagacaccataccctttcgctttaatatcttgtttatgtgtacagAAAAAGATCAGTACAATGACAGCAGATGATTACTTTGAGAAGTACCCTGAACTCAGGAAGAAGTTTGACGATGAAATCCGTAACGATAACTGGGGATATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590406|gb|DB968040.1|DB968040
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192302155|gb|FG997263.1|FG997263
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|214007866|gb|DB986455.1|DB986455
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192334425|gb|FK024118.1|FK024118
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192334424|gb|FK024117.1|FK024117
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|23734897|gb|BU765699.1|BU765699
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298172616|gb|HO019656.1|HO019656
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|58018430|gb|CX705172.1|CX705172
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|4290733|gb|AI437519.1|AI437519
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACCAGAGTTGAAG                         AAAAAGCTCAGTACCATGACG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACG
EST: gi|151403195|gb|EV273005.1|EV273005
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|151413076|gb|EV282884.1|EV282884
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|213608151|gb|DB974891.1|DB974891
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|15286464|gb|BI470355.1|BI470355
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|14990063|gb|BI315736.1|BI315736
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192320476|gb|FK012334.1|FK012334
EST:     AGGAGTTTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192295734|gb|FG990828.1|FG990828
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|213589697|gb|DB973256.1|DB973256
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGAC
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGAC
EST: gi|151399048|gb|EV268919.1|EV268919
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|18848601|gb|BM567756.1|BM567756
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTT
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTT
EST: gi|9564208|gb|BE473717.1|BE473717
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|213603296|gb|DB981953.1|DB981953
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|19938147|gb|BQ081583.1|BQ081583
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|31464426|gb|CD406454.1|CD406454
EST:     AGGAGTCTGAGCGTTTGGTAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGGAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|213597321|gb|DB964394.1|DB964394
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192320477|gb|FK012335.1|FK012335
EST:     AGGAGTTTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|209699416|gb|BW664135.1|BW664135
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298163206|gb|HO011939.1|HO011939
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAGCATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|15663571|gb|BI700942.1|BI700942
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|213606671|gb|DB972555.1|DB972555
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|208043269|gb|GD837887.1|GD837887
EST:     GGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACAATCCTGA
genomic: GGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAAC-ATCCTGA
EST: gi|298172356|gb|HO019396.1|HO019396
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCACGACGGCAGATGA
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGA
EST: gi|19934667|gb|BQ079697.1|BQ079697
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|4405525|gb|AI507674.1|AI507674
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|254345423|gb|GR855866.1|GR855866
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192308179|gb|FK001277.1|FK001277
EST:     AGGAGTCTGAGCGTCTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192309712|gb|FK001018.1|FK001018
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|214009364|gb|DB990076.1|DB990076
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192302154|gb|FG997262.1|FG997262
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192299291|gb|FG988691.1|FG988691
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298199220|gb|HO042583.1|HO042583
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|9987567|gb|BE661675.1|BE661675
EST:     GGAGTCTGAGCCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: GGAGTCTGAGC-GTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|27423780|gb|CA935300.1|CA935300
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|193674424|gb|FK619938.1|FK619938
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAGCATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|8401548|gb|BE057112.1|BE057112
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCATTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|208219189|gb|GE018005.1|GE018005
EST:     GAGCGTTTGGAAAAGGAAATTTGTTGTAAGTACTAAGTAGTTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGA
genomic: GAGCGTTTGGAAAAGGAAA-TTGTTG-AAGTAC-AAG-AG-TTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGA
EST: gi|298170488|gb|HO019112.1|HO019112
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|214010033|gb|DB989405.1|DB989405
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|58021780|gb|CX708521.1|CX708521
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298166983|gb|HO010422.1|HO010422
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAA
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAA
EST: gi|209699417|gb|BW664136.1|BW664136
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|12496502|gb|BG047096.1|BG047096
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|19935135|gb|BQ080165.1|BQ080165
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|151404461|gb|EV274275.1|EV274275
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298163051|gb|HO011784.1|HO011784
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298184504|gb|HO029717.1|HO029717
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|254345422|gb|GR855865.1|GR855865
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298172709|gb|HO019749.1|HO019749
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|58014671|gb|CX701413.1|CX701413
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298179912|gb|HO025127.1|HO025127
EST:     AGGAGTCTGAGCGTT-GGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|207712867|gb|GD693925.1|GD693925
EST:     TGTTGAAGTACAAGTAGTTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGA
genomic: TGTTGAAGTACAAG-AG-TTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGA
EST: gi|193639952|gb|FK594005.1|FK594005
EST:     GGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAAG                         AAAAAGCTCAGTACCAT
genomic: GGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAA-Ggtaataaaaa ... tttttcacagAAAAAGCTCAGTACCAT
EST: gi|298191701|gb|HO035783.1|HO035783
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|58019285|gb|CX706027.1|CX706027
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|18040249|gb|BM308543.1|BM308543
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298163644|gb|HO012377.1|HO012377
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|192308180|gb|FK001278.1|FK001278
EST:     AGGAGTCTGAGCGTCTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|213617607|gb|DB969319.1|DB969319
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|37994969|gb|CF806558.1|CF806558
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|6963937|gb|AW432630.1|AW432630
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|151409411|gb|EV279219.1|EV279219
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|298189156|gb|HO037559.1|HO037559
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGATG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|24135641|gb|BU926151.1|BU926151
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|213601186|gb|DB956494.1|DB956494
EST:     AGGAGTCTGAGCGTTTGGAANAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|8402877|gb|BE058511.1|BE058511
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
EST: gi|151410606|gb|EV280421.1|EV280421
EST:     AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAG                         AAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG
genomic: AGGAGTCTGAGCGTTTGGAAAAGGAAATTGTTGAAGTACAAGAGTTGAAGgtaataaaaa ... tttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcagttttatacaattttaaaaaactctcatactgtcatttttttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAGCTGAGGAAGAAGTTTGATGATGAGATCAGAAATGATAACTGGGGCTATT
                                   ctgtcatttttttttc  CT-rich tract
       ttttatacaattttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaataaaaatcacctcagacttttcagttttatacaattttaaaaaactctcatactgtcatttttttttcacagAAAAAGCTCAGTACCATGACGGCAGATGAGTACTTTGAAAAACATCCTGAGCTGAGGAAGAAGTTTGATGATGAGATCAGAAATGATAACTGGGGCTATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA