1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctgttttttttaattttatttttatatatattttgagttttgcattcacttttgcatgcttgtctgagcagtttactttctaataacagAGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAG
species | Glycine max |
transcript | GLYMA10G35630.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAG AGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGEST: gi|22523699|gb|BU082510.1|BU082510
genomic: ATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAGgtctgttttt ... ctaataacagAGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATG
EST: AGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAG AGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGEST: gi|20498328|gb|BQ273258.1|BQ273258
genomic: AGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAGgtctgttttt ... ctaataacagAGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATG
EST: AGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAG AGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGEST: gi|193611998|gb|FK563597.1|FK563597
genomic: AGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAGgtctgttttt ... ctaataacagAGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATG
EST: AGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAG AGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAACGEST: gi|254331851|gb|GR846161.1|GR846161
genomic: AGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAGgtctgttttt ... ctaataacagAGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATG
EST: AGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAG AGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATG
genomic: AGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAGgtctgttttt ... ctaataacagAGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATG
gagttttgcattcacttttgcatgcttgtctgagcagtttactttctaataacagAGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAG
ttctaat putative branch site (score: 2)
tttactttct CT-rich tract
tttactttctaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttttttttaattttatttttatatatattttgagttttgcattcacttttgcatgcttgtctgagcagtttactttctaataacagAGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA