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gtgagtatctaatgctaggagcttgtttatgacaagcaacaattatcttaatttagggatgctgataaaatattgtactctgggaaactttttcagGACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACCTATGACATGAAGTATGGTGTCAGATCCGTTCAG
species | Glycine max |
transcript | GLYMA10G35560.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACAT GACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACCEST: gi|37996069|gb|CF807658.1|CF807658
genomic: CTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACATgtgagtatct ... actttttcagGACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACC
EST: CTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACAT GACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACCEST: gi|19453140|gb|BM954550.1|BM954550
genomic: CTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACATgtgagtatct ... actttttcagGACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACC
EST: CTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACAT GACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACCEST: gi|6666177|gb|AW277636.1|AW277636
genomic: CTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACATgtgagtatct ... actttttcagGACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACC
EST: CTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACAT GACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACC
genomic: CTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACATgtgagtatct ... actttttcagGACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACC
attatcttaatttagggatgctgataaaatattgtactctgggaaactttttcagGACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACCTATGACATGAAGTATGGTGTCAGATCCGTTCAG
tgctgat putative branch site (score: 3)
ctttttc putative PPT
tgataaaatattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatctaatgctaggagcttgtttatgacaagcaacaattatcttaatttagggatgctgataaaatattgtactctgggaaactttttcagGACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACCTATGACATGAAGTATGGTGTCAGATCCGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG