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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagaaaacatacttaaaacttgggtaactcgttcttcttttattaatccttaattttcttaaatcataaactaacaataagatttatgaatggtttttagGTCTTGTATGGAACAATGGTGGTGGGTTTGACCATAACCCTTTTGACTCTTTTTGGATGGCATGTCTACCTTATCCTTCATAACATGACAACCATAGAG

Basic information

species Glycine max
transcript GLYMA10G35270.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193643011|gb|FK588165.1|FK588165
EST:     TTAAAGGAAGTTCTCTTAAGACCTTTTTT                         GTCTTGTATGGAACAATGGTGGTGGGTTTGACCATAACCCTTTTGACTCTT
genomic: TTAAAGGAAGTTCTCTTAAGACCTTTTTTgtaagttgca ... tggtttttagGTCTTGTATGGAACAATGGTGGTGGGTTTGACCATAACCCTTTTGACTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccttaattttcttaaatcataaactaacaataagatttatgaatggtttttagGTCTTGTATGGAACAATGGTGGTGGGTTTGACCATAACCCTTTTGACTCTTTTTGGATGGCATGTCTACCTTATCCTTCATAACATGACAACCATAGAG
                       aactaac  putative branch site (score: 1)
                                                ttttt  putative PPT
     taattttcttaaatca  TA-rich tract