1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaagctgcatattactactactcttgctgattgatttattgagtttcctttagggttgtaatttattgaatttggaatttcttacgattagtattgtgtttgactaattacttattcttgtttgtcttctctttgtggtagGAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCCATTCACAAACTTGAG
species | Glycine max |
transcript | GLYMA10G35210.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAA GAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCCEST: gi|193640633|gb|FK591394.1|FK591394
genomic: TACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAAgtaagctgca ... tttgtggtagGAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCC
EST: TACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAA GAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCCEST: gi|207766199|gb|GD737729.1|GD737729
genomic: TACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAAgtaagctgca ... tttgtggtagGAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCC
EST: TACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAA GAATGCCAAGTTAGAATAGGTAGATACAAGCTCEST: gi|207829470|gb|GD803598.1|GD803598
genomic: TACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAAgtaagctgca ... tttgtggtagGAATGCCAAGTT-GA-T-GGT-GATACAAGCTC
EST: TACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAA GAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATT
genomic: TACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAAgtaagctgca ... tttgtggtagGAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATT
attagtattgtgtttgactaattacttattcttgtttgtcttctctttgtggtagGAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCCATTCACAAACTTGAG
gactaat putative branch site (score: 2)
ttacttattcttgttt CT-rich tract
taattacttattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgcatattactactactcttgctgattgatttattgagtttcctttagggttgtaatttattgaatttggaatttcttacgattagtattgtgtttgactaattacttattcttgtttgtcttctctttgtggtagGAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCCATTCACAAACTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA