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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctgtgtcgtgagttctacattaatgttcacttgttcagaccatatcacatttttttcatacttcccctttgataataaatcttatttacagtttaatgattccagGTTTCAATAGTACTATTGACTTCTTGTCCTGTTTATATGAAATTCTTCCTTGTTGAAACGGTGATACCGGCTCCGAAAAATGATCGTGAGTCAGGTTGCT

Basic information

species Glycine max
transcript GLYMA10G34820.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389241|gb|CA852448.1|CA852448
EST:     TTCTGGGGGATGTACTGGCTTGGTCTCTTCCTGAAAAGTACATTTTTGCG                         GTTTCAATAGTACTATTGACTTCTTGTCCTGTTTATATGAAATTCTTCCTT
genomic: TTCTGGGGGATGTACTGGCTTGGTCTCTTCCTGAAAAGTACATTTTTGCGgtatgtctgt ... atgattccagGTTTCAATAGTACTATTGACTTCTTGTCCTGTTTATATGAAATTCTTCCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcatacttcccctttgataataaatcttatttacagtttaatgattccagGTTTCAATAGTACTATTGACTTCTTGTCCTGTTTATATGAAATTCTTCCTTGTTGAAACGGTGATACCGGCTCCGAAAAATGATCGTGAGTCAGGTTGCT
                                        gtttaat  putative branch site (score: 4)
                 tttgataataaatctt  TA-rich tract