Sequence
atgc intronic sequence ATGC exonic sequencegtagttctgtggcatgattatactgcatcattgccatatatggccatgtgaatattaaatttcttcaactgcagCCAGAGAACTTATTACTTACCGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
Basic information
species | Glycine max |
transcript | GLYMA10G34430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 3'ss of exon 4
---gtagttctgtggcatgattatactgcatcattgccatatatggccatg-tgaatattaaatttcttcaactg-cagCCAGAGAACTTATTACTTACCGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
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gtagtttctctttcgaatagcttctcttttatggtcttaacaatagctgtgctaagtgtt---tttcttgaaatggtagCCGGAGAATCTGTTGCTGACTTCAGATGGACACATTAAGATTGCGGATTTTGGAAGTGTAAAGCCGATGCAGGATAGCCAGATCACAGTTCTACCTAATG
upper sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 5
gtagttctgtggcatgattatactgcatcattgccatatatggccatgtgaatattaaatttct-tcaactgcagCCAGAGAACTTATTACTTACCGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
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---gtattttaat-tgcctatacaatatttcctttgcatgtgaaaat-----tattaacttttcatgaattgcagCCGGAGAACTTGCTACTTACTGCAGATGGACATATCAAAATTGCTGATTTTGGGAGTGTAAAGCCTATGCAGGATAGTCTAATTACCGTCCTTCCCAATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193642650|gb|FK594104.1|FK594104EST: GAATACATACATAATTTGGGAGTCATACATCGTGATATTAAG CCAGAGAACTTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTT
genomic: GAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGgtagttctgt ... tcaactgcagCCAGAGAACTTATTACTTACCGCTGAAGGACATATTAAAATAGCCGATTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atactgcatcattgccatatatggccatgtgaatattaaatttcttcaactgcagCCAGAGAACTTATTACTTACCGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
tttcttc CT-rich tract
aatattaaatttcttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagttctgtggcatgattatactgcatcattgccatatatggccatgtgaatattaaatttcttcaactgcagCCAGAGAACTTATTACTTACCGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC