1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgaaatcatttatctgcctttacctaacagcttaagctttttggatagttagttcatgacactcattctttttttctttttgtttctttctccaaagcagATTCTCCTGAAGAACCCTTTAGAGTCAGGTATGAGGTTATGGAAGTTCCTATCAATTTACCATTCCAAAAGCCTCCTGCCGAGAAACCTAACCCCAAACA
species | Glycine max |
transcript | GLYMA10G33830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATGATTTTTCCCAAGGGCATGATG ATTCTCTTGAAGAACCCTTTAGAGTCAGGTATGAGGTTATGGAAGTTCCTAEST: gi|193344886|gb|FK310434.1|FK310434
genomic: TGATGATTTTTCCCAAGGGCATGATGgtaagcacaa ... tccaaagcagATTCTCCTGAAGAACCCTTTAGAGTCAGGTATGAGGTTATGGAAGTTCCTA
EST: TGATATGTCTGAACTATGTTTGAGTGATGATTTTTCCCAAGGGCATGATG ATTCTCCTGAAGAACCCTTTAGAGTCAGGTAEST: gi|208223087|gb|GE025676.1|GE025676
genomic: TGATATGTCTGAACTATGTTTGAGTGATGATTTTTCCCAAGGGCATGATGgtaagcacaa ... tccaaagcagATTCTCCTGAAGAACCCTTTAGAGTCAGGTA
EST: TGATATGTCTGAACTATGTTTGAGTGATGATTTTTCCCAAGGGCATGATG ATTCTCCTGAAGAACCCTTTAGAGTCAGGTATGAGGTTATGGAA
genomic: TGATATGTCTGAACTATGTTTGAGTGATGATTTTTCCCAAGGGCATGATGgtaagcacaa ... tccaaagcagATTCTCCTGAAGAACCCTTTAGAGTCAGGTATGAGGTTATGGAA
tagttagttcatgacactcattctttttttctttttgtttctttctccaaagcagATTCTCCTGAAGAACCCTTTAGAGTCAGGTATGAGGTTATGGAAGTTCCTATCAATTTACCATTCCAAAAGCCTCCTGCCGAGAAACCTAACCCCAAACA
tgacactcattctttt CT-rich tract
attctttttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaatcatttatctgcctttacctaacagcttaagctttttggatagttagttcatgacactcattctttttttctttttgtttctttctccaaagcagATTCTCCTGAAGAACCCTTTAGAGTCAGGTATGAGGTTATGGAAGTTCCTATCAATTTACCATTCCAAAAGCCTCCTGCCGAGAAACCTAACCCCAAACA
- - - - - - -ctgcctt
- - - - - - - - - - - cctaaca