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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaaacatggaaatgtctgtccatttgtaatctttagtaactgatgatgccttcttctaatattagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGATTATGCCCAGGAATTAATACAGTGATTAGGGAAATTGTATGTGGCTTGA

Basic information

species Glycine max
transcript GLYMA10G33820.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G33820.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G61580.1 (Arabidopsis thaliana), 3'ss of exon 4
gtataaaa----catggaaatgtctgtccatt-tgtaatctttagtaactgatgatgcct---tcttctaatat-tagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGATTATGCCCAGGAATTAATACAGTGATTAGGGAAATTGTATGTGGCTTGA
|||| |      | |  || |||    |  || ||  || ||| | ||||||       |   | ||    |||  |||| || ||||   |||| ||||||   |||||||||||||||||||| || || ||||| ||||| ||||| || ||  |||||||||||||||| ||||
gtatgatttcttctttaaagtgttaaacttttgtgagatttttcgcaactgaaacctgttaagtttttggttatacagGTGTACTTCAGATCAGATGAAGTAAAAGCTTGCATAGTGACTTGTGGGGGCTTGTGCCCTGGAATCAATACTGTTATACGGGAAATTGTATGTGGATTGA

upper sequence: GLYMA10G33820.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0013g01140.t01 (Vitis vinifera), 3'ss of exon 4
---------gtataaaacatggaaatgtctgtccatttgtaatctttagtaactgatgatgccttctt-ctaatattagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGATTATGCCCAGGAATTAATACAGTGATTAGGGAAATTGTATGTGGCTTGA
          | |  ||    | | |     | | |||| |||| |    |  | |  ||||  |||| |  || | |||||||||||||| |||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||| |||| || |||||||||||||
gtatttgtcttgtccaatcatgcactaagaatgcttttggaatcatggaaatataaatatgcagtctttccgatctcagGTTTATTTCAAGTCAGAGGAAGTACGTGCTTGTATAGTGACATGTGGAGGATTGTGCCCCGGAATCAACACAGTGATTCGGGAGATAGTATGTGGCTTGA

upper sequence: GLYMA10G33820.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S81_165V6.4 (Physcomitrella patens), 3'ss of exon 5
------------------------------------------------------------gtataaaacatggaaatgtctgtccatttg----taatctttagtaactgatgatgccttcttctaatat-tagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGATTATGCCCAGGAATTAATACAGTGATTAGGGAAATTGTATGTGGCTTGA
                                                             | ||       ||| || || |  |  ||      |  |||   |  |  |||  |  | | ||  |    || | || ||| || | || || ||    || ||||| || |||||||||||||||||||| ||||| ||||| |||||| | || ||||| |||||  || 
gttcttaatatccattactcttctcttgatttttaggtaatttgaatacataccaagctaatttactgtcaagaagtgcctttttaagtgacttccacttttgacatttcgtgacactctttccttgtccgcagATATACTTCCAGTCGGAGGATGTGAAGGCATGCATTGTAACTTGTGGAGGATTATGCCCCGGAATCAATACTGTGATTCGTGAGATTGTCTGTGGTCTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9898668|gb|BE607636.1|BE607636
EST:     AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG                         GTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
genomic: AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAGgtataaaaca ... ctaatattagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
EST: gi|16348385|gb|BI973980.1|BI973980
EST:     AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG                         GTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
genomic: AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAGgtataaaaca ... ctaatattagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
EST: gi|26047270|gb|CA784115.1|CA784115
EST:     AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG                         GTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
genomic: AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAGgtataaaaca ... ctaatattagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
EST: gi|213614179|gb|DB956791.1|DB956791
EST:     AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG                         -TTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
genomic: AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAGgtataaaaca ... ctaatattagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
EST: gi|209713393|gb|BW681461.1|BW681461
EST:     AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG                         GTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
genomic: AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAGgtataaaaca ... ctaatattagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
EST: gi|213587009|gb|DB961746.1|DB961746
EST:     AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG                         GTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
genomic: AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAGgtataaaaca ... ctaatattagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGA
EST: gi|209707553|gb|BW680923.1|BW680923
EST:     AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAG                         GTTTATTTNCA-GCCAGAAGAAGTACGTGCTTGCATAGTGACTTGT
genomic: AGGGAAGTCCTAGAGGAGTTCATTTTCGGCGTACAGGACCTCGAGAAAAGgtataaaaca ... ctaatattagGTTTATTT-CAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtctgtccatttgtaatctttagtaactgatgatgccttcttctaatattagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGATTATGCCCAGGAATTAATACAGTGATTAGGGAAATTGTATGTGGCTTGA
                                    tgccttcttct  CT-rich tract
           atttgtaatcttta  TA-rich tract