1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatatacaaaagatccaaatttcccacttacaatattcaaccactatccacttctgtaaggagtagtgatgtttgtgatttcgattgaaaaccttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAAGAACCAACACGCTTTGGAATAGGTTGCTTGGGAAG
species | Glycine max |
transcript | GLYMA10G32850.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|16347483|gb|BI973078.1|BI973078
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|298176989|gb|HO023350.1|HO023350
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAEST: gi|208113533|gb|GD911606.1|GD911606
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|14990231|gb|BI315904.1|BI315904
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|213595183|gb|DB960190.1|DB960190
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|209723482|gb|BW669483.1|BW669483
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|120532833|gb|EH260966.1|EH260966
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|298179399|gb|HO027870.1|HO027870
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATCCACATCAGAEST: gi|151408662|gb|EV278470.1|EV278470
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|209700349|gb|BW664386.1|BW664386
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|298171715|gb|HO021307.1|HO021307
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|120532878|gb|EH261011.1|EH261011
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|15338254|gb|BI498910.1|BI498910
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|213616932|gb|DB959244.1|DB959244
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAEST: gi|192306703|gb|FG998857.1|FG998857
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
EST: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAG GTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
genomic: GGAGTTGTTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCTGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGA
atccacttctgtaaggagtagtgatgtttgtgatttcgattgaaaaccttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAAGAACCAACACGCTTTGGAATAGGTTGCTTGGGAAG
ccttcac CT-rich tract
attgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatacaaaagatccaaatttcccacttacaatattcaaccactatccacttctgtaaggagtagtgatgtttgtgatttcgattgaaaaccttcacagGTCTGGTTTTAAACCTAGAAGACCATTGGAAGTCATATCATTCACATCAGAAGAACCAACACGCTTTGGAATAGGTTGCTTGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC