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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttatgcttatctacttatcttataacgttcattagccagtgcttgtgcaatgtttctgtcagatgcctggcaaatttcgagctagttttctacctttgtgattttactggctattttctaaatattgtgagagtgttactgctttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACGTTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA

Basic information

species Glycine max
transcript GLYMA10G32660.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G22340.3 (Arabidopsis thaliana), 3'ss of exon 3
gtaacttatgcttatctacttatcttataacgttcattagccagtgcttgtgcaatgtttctgtcagatgcctggcaaatttcgagctagttttctacctttgtgattttactggctattttctaaatattgtgagagtgttactgctttggttatctacccttttattggttgagt-gcagGATTTATGTGGTTCATTCTCACGTTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
                                                              || || ||       |  ||   | |  ||    |    |||||    |      ||||| |    | |     ||| |||||        | ||| |  ||||    || || | | ||| ||| | ||||| ||||||||| |||| |||||||||||||| || || ||| |||| ||||| |||||||| |||||  ||||||| || |||   ||
--------------------------------------------------------------gttagttgttatatgaccttttgggt--ttactgattactgtgaggagagcaatgatttt-tgttcact-----agttttacttaacataatctctcctttttttgctgtggaattgtagGCTTTGTTTGGTTTATTCTCACGCTGAAAAAGAAGATGTACAAATATCAGTTTAGCCAATATGCATGGACACATATGATATTAATTGTGGTGTTTACTCA

upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 4
lower sequence: AT1G62430.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaacttatgcttatctacttatcttataacgttcattagccagtgcttgtgcaatgtttctgtcagatgcctggcaaatttcgagctagttttctacctttgtgattttactggctattttctaaatattgtgagagtgttactgctttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACGTTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
                                       | |||| ||||    |   |||||||   |   ||| |  |      ||||  |           | | ||   |  |   ||       |      |   ||| |||||  |  || | ||    | |      | | |||| || ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  | || || || |||   ||
---------------------------------------gtcagt-cttgcttcaccgttctgtcctctttgtggaatttgattttctagcatcggtgaaaataggtcttgacgcttggcttagttgattcaccttacgtttaatgcttatggaatatgcctcgatgt-aacaaatttcagGTTTCATGTGGTTCATTCTCACATTAAAGAAGAAGATGTACAAGTACCAGTTTGGCCAGTATGCTTGGACCCACATGATCTTGATAGTCGTGTTTACTCA

upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0187g00380.t01 (Vitis vinifera), 3'ss of exon 4
gtaacttatgcttatctacttatcttataacgttcattagccagtgcttgtgcaatgtttctgtcagatgcctggcaaatttcgagctagttttctacctttgtgattttactggctattttctaaatattgtgagagtgttactgctttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACGTTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
                                                                    ||  ||    |||| ||  |   ||| ||  ||      |||      |||||| | |||| | |       || |||||    |||| ||| ||||  |  | || |  |||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||  |||
--------------------------------------------------------------------tgt-tgctttattttgatttccgtttatattttc----ctttgtcttttatttttttaataattta------ttgctgctgaaattat-tactcttt-gtgtgatgggctcagGTTTTATGTGGTTTATTCTTACGTTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTAATTGTGGTGTTTACCCA

upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 4
gtaacttatgcttatctacttatcttataacgttcattagccagtgcttgtgcaatgtttctgtcagatgcctggcaaatttcgagctagttttctacctttgtgattttactggctattttctaaatattgtgagagtgttactgctttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACGTTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
                                                                    ||  ||    |||| ||  |   ||| ||  ||      ||| |    |||||| | |||| | |       || |||||    |||| ||| ||||  |  | || |  |||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||  |||
--------------------------------------------------------------------tgt-tgctttattttgatttccgtttatattttc----ctttgccttttatttttttaataattta------ttgctgctgaaattat-tactcttt-gtgtgatgggctcagGTTTTATGTGGTTTATTCTTACGTTAAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTAATTGTGGTGTTTACCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153399|gb|BM143332.1|BM143332
EST:     CAATCTTATAAAGTATCACATGGTTATCTGCTACTCCCTGTACATTGCAG                         GATTTATGTGGTTCATTCTCACGTTGAAGAAGAAGATGTACAAGTACCAAT
genomic: CAATCTTATAAAGTATCACATGGTTATCTGCTACTCCCTGTACATTGCAGgtaacttatg ... ttgagtgcagGATTTATGTGGTTCATTCTCACGTTGAAGAAGAAGATGTACAAGTACCAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattgtgagagtgttactgctttggttatctacccttttattggttgagtgcagGATTTATGTGGTTCATTCTCACGTTGAAGAAGAAGATGTACAAGTACCAATTTGGCCAGTATGCTTGGACACACATGATTCTAATTGTTGTATTTGGCCA
                                    ttttatt  TA-rich tract