1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgactattacatccataaggagtaagttctaccctttcagagaatagaaaaataatcaaaataaaagttagcagtctcacatctctaattttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTACCTGAGTTGGCAAGAATGCCAACTGAGTGGATCCATCATCCTTGGGATG
species | Glycine max |
transcript | GLYMA10G32390.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGCTTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAG ATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTAEST: gi|192297444|gb|FG989508.1|FG989508
genomic: AGGAGGC-TTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGgtttgtcatg ... ttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTA
EST: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAG ATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTAEST: gi|192298001|gb|FG988415.1|FG988415
genomic: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGgtttgtcatg ... ttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTA
EST: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAG ATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTAEST: gi|21600404|gb|BQ610735.1|BQ610735
genomic: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGgtttgtcatg ... ttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTA
EST: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAG ATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAAEST: gi|22525019|gb|BU083830.1|BU083830
genomic: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGgtttgtcatg ... ttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAA
EST: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAG ATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTAEST: gi|6724645|gb|AW309100.1|AW309100
genomic: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGgtttgtcatg ... ttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTA
EST: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAG ATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTAEST: gi|207816178|gb|GD789203.1|GD789203
genomic: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGgtttgtcatg ... ttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTA
EST: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAG ATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTAEST: gi|254328078|gb|GR835043.1|GR835043
genomic: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGgtttgtcatg ... ttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTA
EST: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAG ATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTA
genomic: CAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGgtttgtcatg ... ttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTA
agaaaaataatcaaaataaaagttagcagtctcacatctctaattttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTACCTGAGTTGGCAAGAATGCCAACTGAGTGGATCCATCATCCTTGGGATG
ctctaat putative branch site (score: 3)
aataatcaaaataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgactattacatccataaggagtaagttctaccctttcagagaatagaaaaataatcaaaataaaagttagcagtctcacatctctaattttggtgacagATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTACCTGAGTTGGCAAGAATGCCAACTGAGTGGATCCATCATCCTTGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - acatcca
- - - - - - - - - - - - - - - -ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - aaaataa