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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattatatatacctacgtaggtttctacataggggtggttatgtgtcagcatccattttatgatgatgagaagcttaactaaaaatcttgtactttcagGTAGAGACACCAAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTTAGGTCCACTTCTGTTATGATTGTCAGGATATGGTCCTCGTGGCTTGTCA

Basic information

species Glycine max
transcript GLYMA10G32170.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32170.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0022g01830.t01 (Vitis vinifera), 3'ss of exon 2
----ttattatatatacctacgtaggtttctacataggggtggttatgtgtcagcatccattttatgatgatgagaagcttaactaaaaatcttgtactttcagGTAGAGACACCAAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTTAGGTCCACTTCTGTTATGATTGTCAGGATATGGTCCTCGTGGCTTGTCA
     |    |  ||||      || ||     ||          | |    |   | | | || | |   |||  |  | |  | ||    |  |  |||||||||||    ||||| |||||||| ||||| || |||||||| |   | |||| ||| || ||||| ||||||||| ||||||||||||| ||||| ||| 
ggcgattcctttcatactccttcagattctcctatttcacacacaaagga--aatgttcttattttcagtttgatca-ttcagtttaatcattcat-ttttcagGTAGAAGTTCCAAAAAATCGGGGGAATCGAAAAATGCAACGCTGGCACTTTAAGTCGACATCTGTAATGATTGTCCGGATATGGTCCTCATGGCTCGTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193346759|gb|FK309299.1|FK309299
EST:     AGTAGCCCGAAACCAGATGGAATCAATGCTATGTATTCTGTGGCAG                         GTAGAGACACCAAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTT
genomic: AGTAGCCCGAAACCAGATGGAATCAATGCTATGTATTCTGTGGCAGgttatttttt ... gtactttcagGTAGAGACACCAAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTT
EST: gi|192303864|gb|FG998216.1|FG998216
EST:     ATTCAGTAGCCCGAAACCAGATGGAATCAATGCTATGTATTCTGTGGCAG                         GTAGAGACACCAAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTT
genomic: ATTCAGTAGCCCGAAACCAGATGGAATCAATGCTATGTATTCTGTGGCAGgttatttttt ... gtactttcagGTAGAGACACCAAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcagcatccattttatgatgatgagaagcttaactaaaaatcttgtactttcagGTAGAGACACCAAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTTAGGTCCACTTCTGTTATGATTGTCAGGATATGGTCCTCGTGGCTTGTCA
                                aactaaa  putative branch site (score: 2)
                                              tactttc  putative PPT
                              ttaactaaaaatctt  TA-rich tract