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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgaatcctgaacctttcatagatattttgcttgctttctggttgatattaatgttctcgtaacttacaatgtatttccgatgtttcctgattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCAT

Basic information

species Glycine max
transcript GLYMA10G31370.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31370.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g28270.1 (Oryza sativa), 3'ss of exon 4
------tctgaatcctga--acctttcatagatattttgcttgctttctggttgat--attaatgttctcgtaacttacaatgtatttccgatgtttcctgattctg------cagAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCAT
      ||| |||    |  | |||| |    || || | | |  ||  || |  |  |||| | | |   |    | |||| | | |   |  |  |   ||| |       |||||||||   |||||| |||||||||| ||||||||||| ||||||||||||| ||| || || || || ||||| || |||  ||||| |||| |  |  
gtttgttctaaatttccattatcttttactattactt-gttggacttaaggatagttcattattctgcaacttctctgcaatatttgttttagttacctaaattttattaccacagAATGAGAAGGAATGCGCTTATTATTTAAGAACCGGACAGTGCAAATTTGGGAGCACATGTAAGTTTCATCATCCACAGCCATCTAATACGATGGTTGCTG

upper sequence: GLYMA10G31370.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 4
tctgaatcctgaacctttcatagatattttgctt-gctttctggttgatattaatgttctcgtaacttacaatgt-atttccgatgtttcctgattc-tgcagAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCAT
  || | |||||   |  || || |  |    ||   | | ||       ||  ||   |   |  ||| |   | |||| |  ||||   |  ||| || || |||||  ||| ||  |||||||||| ||||| ||||| ||||| ||||| |  || || ||||| |||||||||||||||  || ||||||| | ||||
--tgca-cctgacattgccaaagctcctgcattttagtgtttgtgcttctttggtgggatgaaattttatatcctgattttccctgttctttctttcgtgtagGATGAGATTGACTGTGCTTATTATTTAAGAACTGGACAGTGCAAGTTTGGAAGTACATGTAAATTTCACCATCCTCAACCATCTAGTATGATGGTTTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213619526|gb|DB963436.1|DB963436
EST:     GAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCT                         AATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGG
genomic: GAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttatt ... gattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGG
EST: gi|17023405|gb|BM094439.1|BM094439
EST:     GAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCT                         AATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGG
genomic: GAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttatt ... gattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGG
EST: gi|22522729|gb|BU081540.1|BU081540
EST:     GAATTGCTGGAAGAGTTGCCCTAAATATTTTAGGTTATCCTCTCCGCCCT                         AATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGG
genomic: GAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttatt ... gattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGG
EST: gi|19270301|gb|BM886557.1|BM886557
EST:     GAATTGCTGGAAGAGTTGCCTTANATATTTTAGGCTATCCTCTCCGCCCT                         AATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAA
genomic: GAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttatt ... gattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAA
EST: gi|23731682|gb|BU763980.1|BU763980
EST:     GAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCT                         AATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGG
genomic: GAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttatt ... gattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatattaatgttctcgtaacttacaatgtatttccgatgtttcctgattctgcagAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCAT
                                       tttcctg  CT-rich tract
                        aatgtattt  TA-rich tract