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gtacttaactgaaactgcaactgtcatcctgctttttaactccaaactgtttactgctaaagttaacttctcatctttgtgactcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAG
species | Glycine max |
transcript | GLYMA10G31310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG ATTGGAGCATTTCATACTTTAGTAACTCGAACTGCAGCGGCCGTTTGTGCTEST: gi|193694789|gb|FK634259.1|FK634259
genomic: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAGgtacttaact ... ctcactgcagATTGGAGCATTTCATACTTTAG-AACTCGAACTGCAGCGGCCGTTTGTGCT
EST: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG ATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCEST: gi|207817396|gb|GD789357.1|GD789357
genomic: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAGgtacttaact ... ctcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTC
EST: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG ATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCEST: gi|193589887|gb|FK545251.1|FK545251
genomic: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAGgtacttaact ... ctcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTC
EST: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG ATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGCTTGTGCTCEST: gi|208189229|gb|GD983633.1|GD983633
genomic: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAGgtacttaact ... ctcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTC
EST: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAAGGAATATGTCAAG ATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCEST: gi|9898819|gb|BE607787.1|BE607787
genomic: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAGgtacttaact ... ctcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTC
EST: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG ATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCEST: gi|208302678|gb|GE097895.1|GE097895
genomic: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAGgtacttaact ... ctcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTC
EST: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG ATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCEST: gi|208316633|gb|GE115779.1|GE115779
genomic: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAGgtacttaact ... ctcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTC
EST: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG ATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCEST: gi|193608468|gb|FK557931.1|FK557931
genomic: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAGgtacttaact ... ctcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTC
EST: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAG ATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTC
genomic: CTATTTTGCGTGTTCGTGGAAAGAACATTTTGGAGAATGAATATGTCAAGgtacttaact ... ctcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTC
aactccaaactgtttactgctaaagttaacttctcatctttgtgactcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAG
gactcac putative branch site (score: 2)
taaagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttaactgaaactgcaactgtcatcctgctttttaactccaaactgtttactgctaaagttaacttctcatctttgtgactcactgcagATTGGAGCATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG