Sequence
atgc intronic sequence ATGC exonic sequence...tacacggcacattacattgcaccgaatgtgcatgcgtgtaggaacataaatactaattttatcaaatagtctctgaagctttgatcattctactagtcagGTTAGTCCGGAGCTCTATGGTGACAACAGACCCAGATTGTTCACTTATTGGACG
Basic information
species | Glycine max |
transcript | GLYMA10G31140.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G31140.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G18460.1 (Arabidopsis thaliana), 3'ss of exon 4
------------------tacacggcacattacattgcaccgaatgtgcatgcgtgtaggaa-cataaatactaat-----------tttatcaaatag----tctctgaagctttgatcattctactagtcagGTTAGTCCGGAGCTCTATGGTGACAACAGACCCAGATTGTTCACTTATTGGACG
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gtactgtttttactgttttacccttctcataatactgttttagtttacgttactttcataagtcataactactgttaagtgtacatgtttaagaaaaggattatatctaaagctgagattgttctactagtcagGTCAGTCCGGAGCTGTATGGTGACAACAGACCAAGATTGTTCACTTATTGGACG
upper sequence: GLYMA10G31140.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------tacacggcacattacattgcaccgaatgtgcatgcgtgtaggaacataaatactaattttatcaaatagtctctgaagctttgatcattc-tactagtcagGTTAGTCCGGAGCTCTATGGTGACAACAGACCCAGATTGTTCACTTATTGGACG
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gtacttttttccatttcctgtcctgccacacactcaatccaaagctc-ctcttttctaatgaatcaattaattattatttaataataaaataaatccacaagtgggattcttaaccgctgattctttatactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGACCCAGATTATTCACTTATTGGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataaatactaattttatcaaatagtctctgaagctttgatcattctactagtcagGTTAGTCCGGAGCTCTATGGTGACAACAGACCCAGATTGTTCACTTATTGGACG
tcattct CT-rich tract
tactaattttatcaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacacggcacattacattgcaccgaatgtgcatgcgtgtaggaacataaatactaattttatcaaatagtctctgaagctttgatcattctactagtcagGTTAGTCCGGAGCTCTATGGTGACAACAGACCCAGATTGTTCACTTATTGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- cacggca
- - - - - - - - ttgcacc
- - - - - - - - - - - - - - -gcatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgaa