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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttatctattgagtatataatatatcatagactcagttgaatattgtaagttaatgacctctcattgtgtaagtttctttttttgatgcgtcatgtcagATATTCACTCTATCAGCAGTACCACTGGAAAGGATGCCAAAGTCCGTCAAGGAATGTTTTATTGTGTTAAAGCCAGGAGGCATGGTTTTTTTTCGGGACT

Basic information

species Glycine max
transcript GLYMA10G31030.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335064|gb|CO978930.1|CO978930
EST:     CCTCGGAAGAATTTGAATGTTGTGGTGGTGGAGTTGATTTTGTAACATTG                         ATATTCACTCTATCAGCAGTACCACTGGAAAGGATGCCAAAGTCCGTCAAG
genomic: CCTCGGAAGAATTTGAATGTTGTGGTGGTGGAGTTGATTTTGTAACATTGgtctgagctt ... gtcatgtcagATATTCACTCTATCAGCAGTACCACTGGAAAGGATGCCAAAGTCCGTCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaagttaatgacctctcattgtgtaagtttctttttttgatgcgtcatgtcagATATTCACTCTATCAGCAGTACCACTGGAAAGGATGCCAAAGTCCGTCAAGGAATGTTTTATTGTGTTAAAGCCAGGAGGCATGGTTTTTTTTCGGGACT
                                    ttttgat  putative branch site (score: 4)
                         taagtttcttttttt  TA-rich tract