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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctttctcttccttttcctgtttgcctaaaattcagtgtatcttcttggcatttgaagttttacttttatctatcttattgaagaaagttccagaggactaattttattacctgtttcaaatcaaaataggaaagtgaactgactttatttctttgaaaatatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG

Basic information

species Glycine max
transcript GLYMA10G30880.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30880.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os04g43650.2 (Oryza sativa), 3'ss of exon 4
gtacgctttctcttccttttcctgtttgcctaaaattcagtgtatcttcttggcatttgaagttttacttttatctatcttattgaagaaagttccagaggactaattttattacctgtttcaaatcaaaataggaaagtgaactgactttatttctttgaaaatatgaatt--agGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG
                                                                                  |  |   || || |     || |   |||||  | | |     | ||      | ||   |    |  | |    |   || | || | |  |||| ||| ||||||||||  |||| ||||| |||||||| |||||||||||||| | |   || || |  |||
---------------------------------------------------------------------------------gtacattcaatttgcttgctaccatgcttattttcagctcactttgaatgggtcacagcataacagcaatttcctctctgaattttgcactgcagGTGTGCATATCTAAAGGGTTAGGCGCTCCTGTTGGATCAGTTATTGTTGGTTCGACGGCCTTCATAGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274705|gb|BF325040.1|BF325040
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGNTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|151394304|gb|EV264175.1|EV264175
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAA
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAA
EST: gi|254320847|gb|GR827296.1|GR827296
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAA-GGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|21993634|gb|BQ785162.1|BQ785162
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|151394063|gb|EV263934.1|EV263934
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAAAG-TATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGT
EST: gi|15338184|gb|BI498848.1|BI498848
EST:     CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCC                         GTTTGCCTATCTAA
genomic: CACTTGGTGTTCCAGTGGATAGGCTTGTCCAGGCGGCTGATTCAGTTTCCgtacgctttc ... tatgaattagGTTTGCCTATCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaatcaaaataggaaagtgaactgactttatttctttgaaaatatgaattagGTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG
                      aactgac  putative branch site (score: 2)
                           actttatttctttgaa  TA-rich tract