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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagaaagtaaatatacggcttaatttgtaggtaatggatcatctactgttaaaaaatgtgcattcttttgtgcttaatattatgaaattgtggttgtagACGGACAGAGCGGCGATGCTTGATGAAATTGTTGACTATGTGAAGTTCCTAAGGCTCCAGGTTAAG

Basic information

species Glycine max
transcript GLYMA10G30430.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30430.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0030g02230.t01 (Vitis vinifera), 3'ss of exon 4
agagaaagtaaatatacggcttaatttgtaggtaatggatcatctactgttaaaaaatgtgcattcttttgtgc-ttaatattatgaaattgtggttgtagACGGACAGAGCGGCGATGCTTGATGAAATTGTTGACTATGTGAAGTTCCTAAGGCTCCAGGTTAAG
   ||||| |||  ||  |  |      | |   |  |       |  ||| |  | | |    | ||        | ||||  ||   ||||      |||| || |||||||| ||||||||||||||||| || |||||||||||  || |||| || || |||
-aggaaagaaaaagtagaggctgccacattgtggaaaggggggaaaaagttgagtattttaatctgttaaaaatactgatatattgctgttgtttgcacagACTGATAGAGCGGCTATGCTTGATGAAATTGTGGATTATGTGAAGTTTTTACGGCTTCAAGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338029|gb|CO981895.1|CO981895
EST:     AAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAG                         ACGGACAGAGCGGCGATGCTTGATGAAATTGTTGACTATGTGAAGTTNNNA
genomic: AAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGgttcgtggtt ... gtggttgtagACGGACAGAGCGGCGATGCTTGATGAAATTGTTGACTATGTGAAGTTCCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgttaaaaaatgtgcattcttttgtgcttaatattatgaaattgtggttgtagACGGACAGAGCGGCGATGCTTGATGAAATTGTTGACTATGTGAAGTTCCTAAGGCTCCAGGTTAAG
                           gcttaat  putative branch site (score: 4)
                             ttaatattatgaaatt  TA-rich tract