1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgttttatgctgctataccttgcttcatttttgttcatttatttttgtgcattgttcataacttagttttctggtgcagAACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCATTTTTGACCACAAATCAGCTTAAT
species | Glycine max |
transcript | GLYMA10G30220.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTG AACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCATEST: gi|193532831|gb|FK492833.1|FK492833
genomic: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTGgtatgtttta ... tctggtgcagAACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCAT
EST: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTG AAACTAGGAATTTTCGCTTCCCAATTGGGGEST: gi|213589825|gb|DB969618.1|DB969618
genomic: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTGgtatgtttta ... tctggtgcagAA-CT-GGA-TTTTCGCTTCCCAATTGGGG
EST: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTG AACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACGEST: gi|151401347|gb|EV271161.1|EV271161
genomic: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTGgtatgtttta ... tctggtgcagAACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACG
EST: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCGAATTGGTG AACTGGGTTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCATEST: gi|209717713|gb|BW671531.1|BW671531
genomic: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTGgtatgtttta ... tctggtgcagAACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCAT
EST: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTG AACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCGTEST: gi|208324877|gb|GE123151.1|GE123151
genomic: TGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTGgtatgtttta ... tctggtgcagAACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCAT
EST: AAAGGGGGTCAAATTGGTG AACTTGGTATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGCGC
genomic: AAAGGGGGTCAAATTGGTGgtatgtttta ... tctggtgcagAAC-TGG-ATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGC
tcatttttgttcatttatttttgtgcattgttcataacttagttttctggtgcagAACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCATTTTTGACCACAAATCAGCTTAAT
tcataac putative branch site (score: 2)
ttttct putative PPT
tttgttcatttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttatgctgctataccttgcttcatttttgttcatttatttttgtgcattgttcataacttagttttctggtgcagAACTGGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCATTTTTGACCACAAATCAGCTTAAT
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