1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagctttggttcttgccttaatttattgaagcccttgtttgggttagttaatgcaatctctcaggtcatttcaataacttggtcttcctcaacagATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGATTCCAAAAGTTAGGAGTTCGTCCTCCCAAGGGAGTGCTGTTATATGGAC
species | Glycine max |
transcript | GLYMA10G29250.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAAAAGCCCACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAG ATTCAAGAATT-GTTGEST: gi|254339477|gb|GR848235.1|GR848235
genomic: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGgtgagctttg ... tcctcaacagATTCAAGAATTAGTTG
EST: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAG ATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGAEST: gi|4313874|gb|AI460993.1|AI460993
genomic: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGgtgagctttg ... tcctcaacagATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGA
EST: ATGANAAGCCAACCGAGGACTACCATGACATTGGTGGATTAGAGAAGCAG ATTCAAGAATTAGTEST: gi|209719376|gb|BW674456.1|BW674456
genomic: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGgtgagctttg ... tcctcaacagATTCAAGAATTAGT
EST: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAG ATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGAEST: gi|120530681|gb|EH258814.1|EH258814
genomic: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGgtgagctttg ... tcctcaacagATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGA
EST: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAG ATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGAEST: gi|254342561|gb|GR858723.1|GR858723
genomic: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGgtgagctttg ... tcctcaacagATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGA
EST: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAG ATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGAEST: gi|7924448|gb|AW830474.1|AW830474
genomic: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGgtgagctttg ... tcctcaacagATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGA
EST: ATGAAAAGCCAACCGANGACTACAATGACATTGGTGGATTAGAGANGCAG ATTCAAGAATTEST: gi|22525777|gb|BU084588.1|BU084588
genomic: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGgtgagctttg ... tcctcaacagATTCAAGAATT
EST: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAG ATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGAEST: gi|7042249|gb|AW472143.1|AW472143
genomic: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGgtgagctttg ... tcctcaacagATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGA
EST: ATGATAAGCCAACCGATGACTACAATGACATTGGTGGATTAGAGAAGCAT ATTCAAGAATGAGTTGAAGCTATTGTTTTGCCCATGACCCACAAAGAGCGA
genomic: ATGAAAAGCCAACCGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGgtgagctttg ... tcctcaacagATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGA
gggttagttaatgcaatctctcaggtcatttcaataacttggtcttcctcaacagATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGATTCCAAAAGTTAGGAGTTCGTCCTCCCAAGGGAGTGCTGTTATATGGAC
caataac putative branch site (score: 2)
tcttcctc putative PPT
atttcaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctttggttcttgccttaatttattgaagcccttgtttgggttagttaatgcaatctctcaggtcatttcaataacttggtcttcctcaacagATTCAAGAATTAGTTGAAGCTATTGTTTTGCCCATGACCCACAAGGAGCGATTCCAAAAGTTAGGAGTTCGTCCTCCCAAGGGAGTGCTGTTATATGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT