1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cagccgacaacagaagacaacaataccttgttgtactgttccatgctatcatttattaaaagctttaacattttacccttggtattttgggtactcacagGCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGATCTTGTTCTAAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATG
species | Glycine max |
transcript | GLYMA10G29000.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAATTTTCGTGAA-CTACTTGCTTCTTCTAGTGATGATGTCCGCNAACAG GCAGTGTGGGCATTAGGAAATGTC-CTTGGGATTCEST: gi|208260245|gb|GE059043.1|GE059043
genomic: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAGgtatattatt ... gtactcacagGCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTC
EST: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAG GCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGATEST: gi|207777000|gb|GD747843.1|GD747843
genomic: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAGgtatattatt ... gtactcacagGCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGAT
EST: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAG GCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGATEST: gi|10847521|gb|BF070194.1|BF070194
genomic: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAGgtatattatt ... gtactcacagGCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGAT
EST: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAG GCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGAT
genomic: CAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAGgtatattatt ... gtactcacagGCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGAT
ctatcatttattaaaagctttaacattttacccttggtattttgggtactcacagGCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGATCTTGTTCTAAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATG
ctttaac putative branch site (score: 3)
atttattaaaagcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagccgacaacagaagacaacaataccttgttgtactgttccatgctatcatttattaaaagctttaacattttacccttggtattttgggtactcacagGCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGATCTTGTTCTAAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATG
- - - - - - - - - aacaatac
- - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - ccatgct