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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttcttcccagagttgtagtttaattgtcagatttggttttggtttcggttttgatcatttctaatctttaatatactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG

Basic information

species Glycine max
transcript GLYMA10G28890.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g61670.1 (Oryza sativa), 3'ss of exon 4
----------------gtacttttcttcccagagtt---gtagtttaattgtcagatttggttttggtttcggttttga-tcatttc-taatctttaatatactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG
                  |||  |  | |     |     |||  |   | |    ||   ||||      |||  | | | || |  |||| | | |  |  |  ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| || |||
gtaacttagagataattcactggttgttctgacttctgaataggctgtctatgctcttctatttttacagaggtcataacttatatggtaatatgttac-tgtttgcagCCAGAAGACTGGGACGACAATGAATACATTCCTGATCCTGAGGACAAGAAGCCTGAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os07g14270.2 (Oryza sativa), 3'ss of exon 4
gtacttttcttcccagagttgtagtttaattgtcagatttggttttggtttcggttttgatcatttctaatctttaatatactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG
      |  ||  || | |  ||| ||  |||  |    | | ||| || ||  | ||||   ||   |   |    |||  | ||||||||| || ||||||||||| || || |||||||| |||||||| ||||| || |||
-----gtattttgcatattcctagctttcttggaatgccttgcttttgtgtc--tcttgaatgttaagatattaccttatgattacagCCAGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCTGAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G074687_T01 (Zea mays), 3'ss of exon 4
gtacttttcttcccagagttgtagtttaattgtcagatttggttttggtttcggttttgatcatttctaatctttaat---atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG
       |     || | |  |  ||   |||| |  ||   || | |   | ||||  |  | ||    | | |      ||  |   |||| || || ||||||||||| ||||| |||||||| |||||||| ||||| ||||||
------gtgaatacataatatttatt--gttgtgaatttcttttcttgaacctgtttgtaataattgaggtttatgtgttgatgattgtagCCTGAGGACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 3'ss of exon 4
gtacttttcttcccagagttgtagtttaattgtcagatttggtt--ttggtttcggttttgatcatttctaatctttaatatactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG
||| ||   |   ||    |  |||  | || ||   ||   ||   |  ||| || |   |  ||        ||||  ||  | |||||| |||||||||||||| || || || |||||||||||||| ||| |||| ||||||
gtaattacttatgcatcaattcagtccagtt-tctttttaacttaactaattttggatg-aacaataatgcgattttataatgataacagCCTGAAGATTGGGATGAGAAGGAGTACATTCCTGATCCTGAAGATGAGAAGCCAGAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g01390.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------------------------gtacttttcttcccagagttgtagtttaattgtcagatttggttttggtttcggttttgatcatttctaatctttaatatactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG
                                                         ||  |||   |    |     |||| ||  ||  |  || | |||  ||||  ||||||  |     |   | |  |  | | |||||| |||| ||||||||| ||||| ||||||||||| ||||| |||||||| ||||||
gtaattactcataagaagttattttttatcttctgtttagattgttgcattatgtgttaaattttggcagtaacccagagttcaagagtgtg--ttagattttctttcctttttgacaag---aagaatgtgttggatttacagCCTGAAGCTTGGGATGATAAAGAGTATATTCCTGACCCTGAAGATAAGAAGCCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193623423|gb|FK577825.1|FK577825
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|10842878|gb|BF066239.1|BF066239
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|33390215|gb|CA853422.1|CA853422
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193577678|gb|FK536201.1|FK536201
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGG
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGG
EST: gi|7147106|gb|AW509028.1|AW509028
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|14259040|gb|BG881948.1|BG881948
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|24135631|gb|BU926141.1|BU926141
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|298191551|gb|HO039030.1|HO039030
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193355757|gb|FK319530.1|FK319530
EST:     ATTGGGACCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|120529175|gb|EH257309.1|EH257309
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|208238448|gb|GE040012.1|GE040012
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGAT
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGAT
EST: gi|193499888|gb|FK464245.1|FK464245
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|7233127|gb|AW568477.1|AW568477
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193359430|gb|FK327567.1|FK327567
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|19938515|gb|BQ081756.1|BQ081756
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|6481781|gb|AW201052.1|AW201052
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193532236|gb|FK491944.1|FK491944
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|208304581|gb|GE104830.1|GE104830
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|6134570|gb|AW132963.1|AW132963
EST:     TTGGGATCTTTCTCC-TCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: TTGGGATCTT-CTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|208282931|gb|GE078929.1|GE078929
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|18735107|gb|BM528567.1|BM528567
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193374876|gb|FK338960.1|FK338960
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAA-                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193406567|gb|FK375526.1|FK375526
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193691571|gb|FK629688.1|FK629688
EST:     CTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAA
genomic: CTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCC-AGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAA
EST: gi|120492727|gb|EH220894.1|EH220894
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193643994|gb|FK593785.1|FK593785
EST:     ATTGGGATC-TCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|208194548|gb|GD988083.1|GD988083
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAA-                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|208289194|gb|GE084899.1|GE084899
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAACATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|151411454|gb|EV281265.1|EV281265
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|208069120|gb|GD869966.1|GD869966
EST:     CCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: CCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|207709119|gb|GD690563.1|GD690563
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|207768814|gb|GD740065.1|GD740065
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|207844292|gb|GD816129.1|GD816129
EST:     TTGGGATCTTCTCCCTCCAAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTAGGGATGACAAAGAA
genomic: TTGGGATCTTCTCCCTCCAAA-GACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATT-GGGATGACAAAGAA
EST: gi|193384654|gb|FK350212.1|FK350212
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|208058762|gb|GD858234.1|GD858234
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|207715665|gb|GD697465.1|GD697465
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|5753695|gb|AI960982.1|AI960982
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|208279821|gb|GE080117.1|GE080117
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCNGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|18040310|gb|BM308604.1|BM308604
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193482078|gb|FK447897.1|FK447897
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|207820736|gb|GD789675.1|GD789675
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATAGAAACAAAGGATATATTC
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGAT-GA--CAAAGAATATATTC
EST: gi|193428394|gb|FK394014.1|FK394014
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGG
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGG
EST: gi|8404295|gb|BE059929.1|BE059929
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193732517|gb|FK668059.1|FK668059
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|193594586|gb|FK546263.1|FK546263
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|23728381|gb|BU762243.1|BU762243
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|19453199|gb|BM954609.1|BM954609
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAAGATCCCGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|120493122|gb|EH221289.1|EH221289
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|207741492|gb|GD713862.1|GD713862
EST:     TCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: TCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
EST: gi|26058830|gb|CA801744.1|CA801744
EST:     ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAA                         CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA
genomic: ATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAAgtacttttct ... atactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagatttggttttggtttcggttttgatcatttctaatctttaatatactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG
                     ttttgatcatttctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacttttcttcccagagttgtagtttaattgtcagatttggttttggtttcggttttgatcatttctaatctttaatatactcacagCCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA