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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcttgtagttttgatacaacccgctttccaaaagatataatgataattatgttcagcataagaaatgatatttttttttttatttgtattgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATA

Basic information

species Glycine max
transcript GLYMA10G28620.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28620.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g22870.1 (Oryza sativa), 3'ss of exon 4
----tgcttgtagttttgatacaacccgctttccaaaagatataatgataattatgttcagcataagaaatgatatttttttttttatttgtattgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATA
           | | |  |    | | | || | ||  |  |   | ||  | ||  |  | |    |  ||| ||     |  || ||       |  | ||||| | |   |||||  | || |  |||||||||||||| || ||||| |||||||| || |||||||| ||||| ||  |||  |||||||| ||||| |
aacagaagaaaattctctaggagaacaggttactaactgtgaaggtaattgtaattctttgaaggctatttgaaataaacatgctttttc----catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCTGATTACCTTCTTGTTGTTGGAGTTTGCTTGAGTCTCAGCATAGCAAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314171|gb|FK011543.1|FK011543
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
EST: gi|18719390|gb|BM523167.1|BM523167
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
EST: gi|193529860|gb|FK485709.1|FK485709
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
EST: gi|192322592|gb|FK014713.1|FK014713
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
EST: gi|19348499|gb|BM893031.1|BM893031
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
EST: gi|192333423|gb|FK023952.1|FK023952
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
EST: gi|58025339|gb|CX712080.1|CX712080
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
EST: gi|192314172|gb|FK011544.1|FK011544
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
EST: gi|298163961|gb|HO013606.1|HO013606
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
EST: gi|298170569|gb|HO019193.1|HO019193
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCA
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCA
EST: gi|192326657|gb|FK017314.1|FK017314
EST:     GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACG                         GCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT
genomic: GGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGgtaagatagt ... tgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattatgttcagcataagaaatgatatttttttttttatttgtattgttctgcagGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATA
                                            ttgttct  CT-rich tract
             ataagaaatgatattt  TA-rich tract