1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tactcttatatatctaaatccaatatttttaattccatttttggctaagattgttgtaagttcttgaagagttttcaatatgttgattgttgtgttttagTGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAATATGCTCTGTTATATCAGCTTCTTAAGATTTTTCTTACCCAGAGGCTGG
species | Glycine max |
transcript | GLYMA10G28080.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAG TGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAAEST: gi|120529357|gb|EH257491.1|EH257491
genomic: AAGCTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAGgtaccttgtc ... tgtgttttagTGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAA
EST: AAACTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAG TGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAAEST: gi|19270523|gb|BM886779.1|BM886779
genomic: AAGCTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAGgtaccttgtc ... tgtgttttagTGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAA
EST: AAGCTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAG TGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAAEST: gi|15203368|gb|BI426136.1|BI426136
genomic: AAGCTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAGgtaccttgtc ... tgtgttttagTGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAA
EST: AAGCTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAG TGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAAEST: gi|15000061|gb|BI320875.1|BI320875
genomic: AAGCTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAGgtaccttgtc ... tgtgttttagTGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAA
EST: AAGCTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAG TGTGATTTGCTAGACTTGCCTGCTGTTGCACCAACTGGAGAAGGATGCCAA
genomic: AAGCTGCATGTGCTATTGTGGAATTTGTGAGGGCACCTGACATATTTCAGgtaccttgtc ... tgtgttttagTGTGATTTGCTAGACTTGCCTGCTGTTGCAC-AACTGGAGAAGGATGCCAA
taagattgttgtaagttcttgaagagttttcaatatgttgattgttgtgttttagTGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAATATGCTCTGTTATATCAGCTTCTTAAGATTTTTCTTACCCAGAGGCTGG
tgttgat putative branch site (score: 4)
ttttcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactcttatatatctaaatccaatatttttaattccatttttggctaagattgttgtaagttcttgaagagttttcaatatgttgattgttgtgttttagTGTGATTTGCTAGACTTGCCTGCTGTTGCACAACTGGAGAAGGATGCCAAATATGCTCTGTTATATCAGCTTCTTAAGATTTTTCTTACCCAGAGGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat