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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatatatttgctctggatttttgccataatttattgagtatttcactaattcaattaatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG

Basic information

species Glycine max
transcript GLYMA10G27890.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G27890.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 3'ss of exon 4
gtaataatatatttgctc-tggatttttgccataatttat---tgagtatttcactaattc----aattaatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG
    |||||||  ||| | | |  || |   || |||  |   |||  || |    ||| |    ||||  ||||| |||||| ||||||| ||||| || || || |||||||||||   |||||||||||  |||||||| || |||||||||   ||
---gtaatatacatgcacataggcttgttttatgattcttccatgaaaatatgttcaatgccctgaatttttcatgcagGCGTTTGCCAAAGCCAAAGGGGCAAACGGTTGGATCTTTTAAGAAGGGACTTATTATGTTGCCAGAAGCAATTTCTAAAAG

upper sequence: GLYMA10G27890.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ23527 (Selaginella moellendorffii), 3'ss of exon 4
gtaataatatatttgctctggatttttgccataatttattgagtatttcacta-attcaattaatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG
                         |     | ||| |   |||  ||    | |||  |||     |||||||| ||||| |||||||| ||||| ||||||||||| || || ||||| || | |  | | ||  | || ||  |  | | 
------------------------gtaagtctgattaaagcagttctttttgagatttcattttcgttgtagGCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAA

upper sequence: GLYMA10G27890.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ34803 (Selaginella moellendorffii), 3'ss of exon 3
gtaataatatatttgctctggatttttgccataatttattgagtatttcactaattcaattaatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG
                        |  | |  | |  |     | | ||    |||  |||     |||||||| ||||| |||||||| ||||| ||||||||||| || || ||||| || | |  | | ||  | || ||  |  | | 
-----------------------gtaagtctgattaaagcagttctctctgagatttcattttcgttgtagGCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312907|gb|FK004049.1|FK004049
EST:     TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCC                         GCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
genomic: TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCCgtaataatat ... aatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
EST: gi|15338083|gb|BI498739.1|BI498739
EST:     TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCC                         GCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
genomic: TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCCgtaataatat ... aatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
EST: gi|17022014|gb|BM093048.1|BM093048
EST:     TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCC                         GCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT
genomic: TTCAAAGCAATACAAGAGAGAAATGGAGCTTCAAAACCACCTCGAGATCCgtaataatat ... aatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggatttttgccataatttattgagtatttcactaattcaattaatcatgtagGCGTCTGCCAAAACCAAAAGGTCAGACTGTTGGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG
              ataatttattgagtat  TA-rich tract