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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcactaatagtgagcttggttttgattacttgagagACAATCTTGCCACGGAAA

Basic information

species Glycine max
transcript GLYMA10G27810.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G27810.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G01800.2 (Arabidopsis thaliana), 3'ss of exon 4
gtcactaatagtgagcttggttttgattacttgagagACAATCTTGCCACGGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
||||| || ||||||||||| ||||||||  ||||||||||||| ||||||||||                                                                                                                                                                                           
gtcaccaacagtgagcttggatttgattatctgagagacaatctagccacggaaagtaattcttgctttattttctcctttcattattgattgtatgagtttattttggatgttttttctgagttagtttctgattgtacagAGTGTTGAGGAGCTCGTCTTGAGGGATTTCAATTATTGTGTGATTGATGAAGTTGATTCCATACTTATTGATGAAGCAAGGACTCCTCTCATTATCTCTG

upper sequence: GLYMA10G27810.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------------------------------------------------------------------------------------------------------------------gtcactaatagtgagcttggttttgattacttgagagACAATCTTGCCACGGAAA
                                                                                                                                                         ||||| || ||||||||||||||||||| ||||||||||||||||||        
ggattggtccttttaagtctataagttctgcttctaagtattagttgatgagttaacgttatgactggaatatataacaatttgatgtttatactggcagAGAATATGACAAGTGAACAAAGGAGGGAAAATTACTTATGTGACATCACATATGTCACAAACAGTGAGCTTGGTTTTGATTTCTTGAGAGACAATCTTGC--------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcactaatagtgagcttggttttgattacttgagagACAATCTTGCCACGGAAA
                                                                         ttttgatta  TA-rich tract