1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacagtttgaactttgaactgcacattctcatgtttgtgctctctttccttctagttgtaagctactcaaaatcttactgtcatttgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAACTTGGTAGAAATTGATCCTTTAGCATCCCTTCCAAAGCTGCACTTCCT
species | Glycine max |
transcript | GLYMA10G24350.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGCTCATT-ACNAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|208075968|gb|GD873385.1|GD873385
genomic: ATGCTCATTAAC-AACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AACAACAGGATTACTTAGTAATTTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|27425309|gb|CA936829.1|CA936829
genomic: AACAACAGGATTAC-TAG-AA-TTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|58023144|gb|CX709885.1|CX709885
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: GGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|192320515|gb|FK011925.1|FK011925
genomic: GGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|23052917|gb|BU577408.1|BU577408
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|7691074|gb|AW759208.1|AW759208
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|13479182|gb|BG508525.1|BG508525
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|213618238|gb|DB973008.1|DB973008
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|16106162|gb|BI893902.1|BI893902
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|13791609|gb|BG654200.1|BG654200
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|192308052|gb|FG999035.1|FG999035
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|213595893|gb|DB966252.1|DB966252
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|10232355|gb|BE801243.1|BE801243
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAEST: gi|27446299|gb|CA953422.1|CA953422
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
EST: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAG AGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
genomic: AATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagtttg ... tgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAA
tctctttccttctagttgtaagctactcaaaatcttactgtcatttgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAACTTGGTAGAAATTGATCCTTTAGCATCCCTTCCAAAGCTGCACTTCCT
atcttac putative branch site (score: 3)
aaaatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtttgaactttgaactgcacattctcatgtttgtgctctctttccttctagttgtaagctactcaaaatcttactgtcatttgtattgcagAGTTCTTGCCAAATTTACACACTCTAGTTCTCACAAACAACAGAATTGTAAACTTGGTAGAAATTGATCCTTTAGCATCCCTTCCAAAGCTGCACTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC