1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cctcaaacaatttttttttctttgaatttcatcaatttatggttgaaaagggtggaaatgaacatgcattccttgctttccttctttgatttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAATGGTCCAATAACCGATGAACTTAGGATGCAAATACAGCTAACCAGATA
species | Glycine max |
transcript | GLYMA10G24340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|209721129|gb|BW659167.1|BW659167
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|298194018|gb|HO040666.1|HO040666
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|192302476|gb|FG996254.1|FG996254
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|151397948|gb|EV267821.1|EV267821
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|58017309|gb|CX704051.1|CX704051
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|192319095|gb|FK010631.1|FK010631
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAAEST: gi|11274924|gb|BF325249.1|BF325249
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|192313351|gb|FK005123.1|FK005123
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|151395355|gb|EV265226.1|EV265226
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|192294004|gb|FG987173.1|FG987173
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|209721128|gb|BW659166.1|BW659166
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|163927119|gb|EH038550.1|EH038550
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTGGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|151395434|gb|EV265311.1|EV265311
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: AACACAAGGTGTAGTGCTACATACCTGCCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|151398285|gb|EV267869.1|EV267869
genomic: AACACAAGGTGTAGTGCTACATACCTGCC-TGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAEST: gi|17519784|gb|BM188826.1|BM188826
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
EST: AACACAAGGTGTAGTGCTACATACCTGCCTGAAATGTGC-GCCAATGAAG GTTGGACAAAAACCGAAGCCEST: gi|15000051|gb|BI320865.1|BI320865
genomic: AACACAAGGTGTAGTGCTACATACCTGCCTGAAGTG-GCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCC
EST: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAG GTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
genomic: TAACACAAGGTGTAGTGCTACATACCTGCCTGAAGTGGCCGCCAATGAAGgtaacttatg ... ttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACA
aaaagggtggaaatgaacatgcattccttgctttccttctttgatttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAATGGTCCAATAACCGATGAACTTAGGATGCAAATACAGCTAACCAGATA
ctttgat putative branch site (score: 5)
ttccttgctttccttc CT-rich tract
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctcaaacaatttttttttctttgaatttcatcaatttatggttgaaaagggtggaaatgaacatgcattccttgctttccttctttgatttggtttcagGTTGGACAAAAACCGAAGCCGTTGATTCTTTGATACGTAAAGCAGGGTACAATGGTCCAATAACCGATGAACTTAGGATGCAAATACAGCTAACCAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
cctcaaa
- - - - - - - - - - - - - - - - - - - - - - - - -gggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaac