1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtatgcctcctatctcctgtttgaagtgtattaaacgttatcactgtaactaatattactattgctatgatcatgattttcatctttattattgttcagAGATACCCGTTCTAAAGTATTGGAAGAAAGCCTTCAAAAGCTTGGTGTTGAGAAACTCAGCAAAGATGATGTTCAAAAGCTACAATGGGAGGTTTTGGAA
species | Glycine max |
transcript | GLYMA10G23810.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGCAAATGGTTCAAGCTGGTCACCAACAACAGTTGCTCAAAACATACAG AGATACCCGTTCTAAAGTATTGGAAGAAAGCCTTCAAAAGCTTGGTGTTGAEST: gi|23727540|gb|BU761804.1|BU761804
genomic: CAGCAAATGGTTCAAGCTGGTCACCAACAACAGTTGCTCAAAACATACAGgtaaatctcc ... tattgttcagAGATACCCGTTCTAAAGTATTGGAAGAAAGCCTTCAAAAGCTTGGTGTTGA
EST: CAGCAAATGGTTCAAGCTGGTCACCAACAACAGTTGCTCAAAACATACAG AGATACCCGTTCTAAAGTATTGGAAGAAAGCCTTCAAAAGCTTGGTGTTGA
genomic: CAGCAAATGGTTCAAGCTGGTCACCAACAACAGTTGCTCAAAACATACAGgtaaatctcc ... tattgttcagAGATACCCGTTCTAAAGTATTGGAAGAAAGCCTTCAAAAGCTTGGTGTTGA
tgtaactaatattactattgctatgatcatgattttcatctttattattgttcagAGATACCCGTTCTAAAGTATTGGAAGAAAGCCTTCAAAAGCTTGGTGTTGAGAAACTCAGCAAAGATGATGTTCAAAAGCTACAATGGGAGGTTTTGGAA
aactaat putative branch site (score: 2)
ttttcatctttatt putative PPT
atgattttcatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatgcctcctatctcctgtttgaagtgtattaaacgttatcactgtaactaatattactattgctatgatcatgattttcatctttattattgttcagAGATACCCGTTCTAAAGTATTGGAAGAAAGCCTTCAAAAGCTTGGTGTTGAGAAACTCAGCAAAGATGATGTTCAAAAGCTACAATGGGAGGTTTTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-gtatgcc
- - - - - - - ctcctgt
- - - - - - - - - - - tgaagtg
- - - - - - - - - - - - - - - - - - - - - cactgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatg