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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtcttctctgttattcatgaacttcattaattcagtacgcatgaagtttgacattttgctttgacagGTCCCTTTTGCAAGGTCTTCGTTGAACCATGAAGATGTATTCATACTAGATACTGAGAACAAGATTTATCAATTCAATGGTGCAAATTCCAATATTCAGG

Basic information

species Glycine max
transcript GLYMA10G21350.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g24220.2 (Oryza sativa), 3'ss of exon 5
----gtatagtctt--ctctgttattcatgaacttcattaattcagtacgcatgaagtttgacattttgctttgacagGTCCCTTTTGCAAGGTCTTCGTTGAACCATGAAGATGTATTCATACTAGATACTGAGAACAAGATTTATCAATTCAATGGTGCAAATTCCAATATTCAGG
     ||   | |   |||  |  ||| |  ||| | |||  ||   | |    |      | || |    |   ||||| || |||||  | || || ||||| ||||| |||||||| ||  | ||||| || || || || |||||||||||||||||||| ||||||||||| |
gtgactactatttcacctccctgtttcttagactactttatctcctcatgttatatacactaaatgtcctatattcagGTTCCATTTGCTCGCTCGTCATTGAATCATGATGATGTATTTATCTTGGATACGGAAAAGAAAATATATCAATTCAATGGTGCAAACTCCAATATTCAAG

upper sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G081322_T01 (Zea mays), 3'ss of exon 5
---------gtatagtct--tctctgttattcatgaacttcattaattcagtacgcatgaagtt-tgacattttgctttgacagGTCCCTTTTGCAAGGTCTTCGTTGAACCATGAAGATGTATTCATACTAGATACTGAGAACAAGATTTATCAATTCAATGGTGCAAATTCCAATATTCAGG
         ||     |   ||   | |     |    ||||| |  |   || ||      |  ||   | ||  ||   ||||| || ||| |  | || |||||||||||||| ||||| || ||  | |||||||||||||| || ||||||||||| |||||||| ||||| || || |
gtgcattgtgttccaccacatcctcgcttcctgtatgtttcatcagctgtttaagccaatcctaatgctgtcttctttgctcagGTTCCATTTTCTCGTTCATCGTTGAACCATGATGATGTCTTTATCTTGGATACTGAGAACAAAATATATCAATTCAACGGTGCAAACTCCAACATCCAAG

upper sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 4
---gtatagtcttctc---tgttattcatgaacttcattaattcagtacgcatgaagtttg------acattttgctttgacagGTCCCTTTTGCAAGGTCTTCGTTGAACCATGAAGATGTATTCATACTAGATACTGAGAACAAGATTTATCAATTCAATGGTGCAAATTCCAATATTCAGG
   ||||| ||| |     |||  ||||||| ||       |||| |  || || || | |       ||||||| ||   |||||||| |||||  |||||||  | || || || ||||| || || || || || || || || |||||||| ||||||||||||||||||||||| ||||
gtagtatattctcccaacatgtatttcatgatctaatcacgttcactgtgc-tgcagctggtcacctgcattttggttgtgcagGTCCCCTTTGCTCGGTCTTCACTAAATCACGATGATGTGTTTATCCTGGACACAGAAAATAAAATTTATCAGTTCAATGGTGCAAATTCCAATATCCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcatgaacttcattaattcagtacgcatgaagtttgacattttgctttgacagGTCCCTTTTGCAAGGTCTTCGTTGAACCATGAAGATGTATTCATACTAGATACTGAGAACAAGATTTATCAATTCAATGGTGCAAATTCCAATATTCAGG
                                         ttttgcttt  CT-rich tract
          ttcattaatt  TA-rich tract