1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgccttaccaatcctttcttaggatatttcacatgctttacttttattgttattcttgtcctcgtcaaactggtcaactgcttcctctctttgggtcgctttattgttgcatcttctaggcttagtatttgtaatgctgcttcatctatagatatgatgtaattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCCACAGCATTCATTGTTAACAAGAGGAGGAGGCCTCAATTCAAAGATTTT
species | Glycine max |
transcript | GLYMA10G16090.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|192314055|gb|FK008795.1|FK008795
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|19053227|gb|BM731894.1|BM731894
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|58015713|gb|CX702455.1|CX702455
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|13789066|gb|BG651657.1|BG651657
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|193680150|gb|FK625302.1|FK625302
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|193643003|gb|FK592931.1|FK592931
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|6481581|gb|AW200852.1|AW200852
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|8283830|gb|BE021389.1|BE021389
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|208292989|gb|GE089855.1|GE089855
genomic: AAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|209707121|gb|BW661575.1|BW661575
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|58015407|gb|CX702149.1|CX702149
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: TCATGACAATGGGAG-ACACAAATAATTTGATCTGTTC-ATCAGGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGEST: gi|21479769|gb|BQ576452.1|BQ576452
genomic: TCATGACAATGGGAGAACACAAATAA-TTGATCTGTTCAATCA-GGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGG
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|7588257|gb|AW704056.1|AW704056
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|16105694|gb|BI893434.1|BI893434
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|7692974|gb|AW761073.1|AW761073
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAAGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTAGCGATACTTGGCEST: gi|10709957|gb|BF009681.1|BF009681
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCEST: gi|21888755|gb|BQ741968.1|BQ741968
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctta ... taattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGC
tctaggcttagtatttgtaatgctgcttcatctatagatatgatgtaattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCCACAGCATTCATTGTTAACAAGAGGAGGAGGCCTCAATTCAAAGATTTT
ttttc CT-rich tract
atatgatgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccttaccaatcctttcttaggatatttcacatgctttacttttattgttattcttgtcctcgtcaaactggtcaactgcttcctctctttgggtcgctttattgttgcatcttctaggcttagtatttgtaatgctgcttcatctatagatatgatgtaattttcagGTATCTAAATGCTATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCCACAGCATTCATTGTTAACAAGAGGAGGAGGCCTCAATTCAAAGATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG