1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatttcatcataaatatggtagtcttagatttgaaattgtgtttctgcgactcatctggtttttgctactgattgattattgaacattattattcatcagCGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCG
species | Glycine max |
transcript | GLYMA10G12560.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAG CGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGEST: gi|27425321|gb|CA936841.1|CA936841
genomic: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGgtgattatct ... tattcatcagCGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAG
EST: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAG CGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGEST: gi|209712321|gb|BW668509.1|BW668509
genomic: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGgtgattatct ... tattcatcagCGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAG
EST: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAG CGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGEST: gi|298198460|gb|HO039999.1|HO039999
genomic: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGgtgattatct ... tattcatcagCGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAG
EST: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAG CGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGEST: gi|15000726|gb|BI321540.1|BI321540
genomic: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGgtgattatct ... tattcatcagCGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAG
EST: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAG CGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGEST: gi|254329771|gb|GR839324.1|GR839324
genomic: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGgtgattatct ... tattcatcagCGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAG
EST: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAG CGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAG
genomic: CCAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGgtgattatct ... tattcatcagCGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAG
tgcgactcatctggtttttgctactgattgattattgaacattattattcatcagCGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCG
attgattattgaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttcatcataaatatggtagtcttagatttgaaattgtgtttctgcgactcatctggtttttgctactgattgattattgaacattattattcatcagCGTTCAGGTTGCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - -tttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg