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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcagTTACCCCAAGGACTCAGACAAGCACATGCTTGCTAAACAAACAGGGCTTACCAGGAGCCAG

Basic information

species Glycine max
transcript GLYMA10G10040.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10040.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0105g00230.t01 (Vitis vinifera), 3'ss of exon 10
gtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcagTTACCCCAAGGACTCAGACAAGCACATGCTTGCTAAACAAACAGGGCTTACCAGGAGCCAG
||||| |  |    ||| | || || |||      ||    ||   |         |||    || ||| ||      | ||||||| ||    ||||||||| || ||||| ||||||||||||||||| || |||||||||||||| ||| |||| |||
gtaagcac-ctttcaattttattttattt------ttccccttcaaagcccagtaattccagttgctgagat------attttggttgtg----tttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098270|gb|HO760011.1|HO760011
EST:     AGATCGGTTTCTGTTCTGCGTACTTGGCTCTTTGAACACTTTCTTCATCC                         TTACCCCAAGGACTCAGACAAGCACATGCTTGCTAAACAAACAGGGCTTAC
genomic: AGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTTCATCCgtaaggatac ... gttttttcagTTACCCCAAGGACTCAGACAAGCACATGCTTGCTAAACAAACAGGGCTTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcagTTACCCCAAGGACTCAGACAAGCACATGCTTGCTAAACAAACAGGGCTTACCAGGAGCCAG
                                              ttttttc  CT-rich tract
                                              ttttttca  TA-rich tract