1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctttctagcattgtggatacgggtgaaaaaactgtatattggtagatcaagataataatctatattcatctcaaatattgaacccttatgtttatggcagCTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTCATAAGAAGCTTGCATTTGCCTTTGCAGCTAAG
species | Glycine max |
transcript | GLYMA10G08680.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACG CTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTCATAAGAEST: gi|151406795|gb|EV276610.1|EV276610
genomic: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACGgtaattttat ... tttatggcagCTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTCATAAGA
EST: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACG CTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTCATAAGAEST: gi|151401727|gb|EV271540.1|EV271540
genomic: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACGgtaattttat ... tttatggcagCTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTCATAAGA
EST: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACG CTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTCATAAGAEST: gi|209708303|gb|BW683893.1|BW683893
genomic: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACGgtaattttat ... tttatggcagCTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTCATAAGA
EST: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACG CTGGAGCTAAAATTAGGTCTGGGTGGEST: gi|213587093|gb|DB965881.1|DB965881
genomic: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACGgtaattttat ... tttatggcagCTGGAGCTAAAATTAGGTCTGGGTGG
EST: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACG CTGGAGCTAAAATTAGGTCEST: gi|16995619|gb|BM084991.1|BM084991
genomic: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACGgtaattttat ... tttatggcagCTGGAGCTAAAATTAGGTC
EST: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACG CTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTC
genomic: TATCATTCATATCTGCAATAATTGTATTTGGTGGGCTTATTGCACCGACGgtaattttat ... tttatggcagCTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTC
atcaagataataatctatattcatctcaaatattgaacccttatgtttatggcagCTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTCATAAGAAGCTTGCATTTGCCTTTGCAGCTAAG
ataataatctatattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttctagcattgtggatacgggtgaaaaaactgtatattggtagatcaagataataatctatattcatctcaaatattgaacccttatgtttatggcagCTGGAGCTAAAATTAGGTCTGGGTGGCACCTCATATGAAGATTTCATAAGAAGCTTGCATTTGCCTTTGCAGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttatg