1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actttactattgggattattgtattaatttgtattcttgtatcatttttaggcctggttcagagaacttctaactggggtattggaccctctttcaccagAGCAGGTGATGCAGTCCCAATCAGAAGAAGAATGTGCTCAGCTTGTGAGGTTTCTTCCTCAGACAGAAGCTACTTTACTAGATTGGGGGATAAACCTTAT
species | Glycine max |
transcript | GLYMA10G08610.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
ttttaggcctggttcagagaacttctaactggggtattggaccctctttcaccagAGCAGGTGATGCAGTCCCAATCAGAAGAAGAATGTGCTCAGCTTGTGAGGTTTCTTCCTCAGACAGAAGCTACTTTACTAGATTGGGGGATAAACCTTAT
ttctaac putative branch site (score: 1)
ccctctttcacc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttactattgggattattgtattaatttgtattcttgtatcatttttaggcctggttcagagaacttctaactggggtattggaccctctttcaccagAGCAGGTGATGCAGTCCCAATCAGAAGAAGAATGTGCTCAGCTTGTGAGGTTTCTTCCTCAGACAGAAGCTACTTTACTAGATTGGGGGATAAACCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - ctattgg
- - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctggttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaactg