1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatctttcaaagtgatttactttcgttatcatttctacgtttctttaaaacattgacctaaacaaataactactgttttcttgaacttgaatatgccagCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTT
species | Glycine max |
transcript | GLYMA10G07490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTTGGGTAAATGTGACAGGTTTAGAAAGATGTACTGCGTACCAAGTTGG CATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAEST: gi|208223601|gb|GE025322.1|GE025322
genomic: GCTTGGGTAAATGTGACAGGTTTAGAAAGATGTACTGCGTACCAAGTTGGgtaaggttaa ... aatatgccagCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAA
EST: GCTTGGGTAAATGTGACAGGTTTAGAAAGATGTACTGCGTACCAAGTTGG CATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAA
genomic: GCTTGGGTAAATGTGACAGGTTTAGAAAGATGTACTGCGTACCAAGTTGGgtaaggttaa ... aatatgccagCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAA
ttaaaacattgacctaaacaaataactactgttttcttgaacttgaatatgccagCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTT
aaataac putative branch site (score: 2)
taaacaaataacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctttcaaagtgatttactttcgttatcatttctacgtttctttaaaacattgacctaaacaaataactactgttttcttgaacttgaatatgccagCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTT
- - - - - - - - - - - - - - - - - - - - - - - -aaaacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa