1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctgttgctctgttgttgacattctctctgtctctaggttcataggctgttgtaatgaaaagcagtaaaattttgtatgacaagaataaaacttgttgcagGATATGTTCGAGGAGAAAAGGAACATATTAGAACCAGCAGGTGCACTTGCACTAGCTGGAGCTGAGGCATACTGCAAGCATCATGGGGTCCAGGGGAAAG
species | Glycine max |
transcript | GLYMA10G07340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGATGGCGTTGTTCTTGTAAGCCGTGATTCAATTTGTGCGTCAATAAAA GATATGTTCGAGGAGAAAAGGAACATATTAGAACCAGCAGGTGCACTTGCAEST: gi|15814236|gb|BI786511.1|BI786511
genomic: TAGATGGCGTTGTTCTTGTAAGCCGTGATTCAATTTGTGCGTCAATAAAAgtaagatttt ... cttgttgcagGATATGTTCGAGGAGAAAAGGAACATATTAGAACCAGCAGGTGCACTTGCA
EST: TAGATGGCGTTGTTCTTGTAAGCCGTGATTCAATTTGTGCGTCAATAAAA GATATGTTCGAGGAGAAAAGGAACATATTAGAACCAGCAGGTGCACTTGCA
genomic: TAGATGGCGTTGTTCTTGTAAGCCGTGATTCAATTTGTGCGTCAATAAAAgtaagatttt ... cttgttgcagGATATGTTCGAGGAGAAAAGGAACATATTAGAACCAGCAGGTGCACTTGCA
ctgttgtaatgaaaagcagtaaaattttgtatgacaagaataaaacttgttgcagGATATGTTCGAGGAGAAAAGGAACATATTAGAACCAGCAGGTGCACTTGCACTAGCTGGAGCTGAGGCATACTGCAAGCATCATGGGGTCCAGGGGAAAG
agtaaaattttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttgctctgttgttgacattctctctgtctctaggttcataggctgttgtaatgaaaagcagtaaaattttgtatgacaagaataaaacttgttgcagGATATGTTCGAGGAGAAAAGGAACATATTAGAACCAGCAGGTGCACTTGCACTAGCTGGAGCTGAGGCATACTGCAAGCATCATGGGGTCCAGGGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
ctgttgc
- - - - - gttgttg
- - - - - - - - - cattctc
- - - - - - - - - - - - - ctgtctc
- - - - - - - - - - - - - - - - - - - - - aggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa