1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagactttaggagcatatatttctcctaatttccggttattgtcaagatgtattctattgaacaatttctctaatagtttatttatttgtctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGG
species | Glycine max |
transcript | GLYMA10G06780.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGEST: gi|298191339|gb|HO038818.1|HO038818
genomic: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
EST: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATGGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGEST: gi|13311878|gb|BG405529.1|BG405529
genomic: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
EST: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
genomic: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
agatgtattctattgaacaatttctctaatagtttatttatttgtctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGG
ctctaat putative branch site (score: 3)
tctattctt putative PPT
aacaatttctctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagactttaggagcatatatttctcctaatttccggttattgtcaagatgtattctattgaacaatttctctaatagtttatttatttgtctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGG
- - - - - - gcatata
- - - - - - - - - - - - - - - - - - - - tgtcaag
- - - - - - - - - - - - - - - - - - - - - - - - tgtattc