1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatattggtgaaattgatgtatgagaaaactgcatttggaaatagttagtatcaggaaattaatgacactgcttaattttctgaccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTTTGTGCTGGCTTGATTGGAGGATTGGGCT
species | Glycine max |
transcript | GLYMA10G06590.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|192329562|gb|FK022226.1|FK022226
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|192328451|gb|FK020725.1|FK020725
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAG-AAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGA-TCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
aaatagttagtatcaggaaattaatgacactgcttaattttctgaccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTTTGTGCTGGCTTGATTGGAGGATTGGGCT
ttctgac putative branch site (score: 2)
ttttctgaccttcctc CT-rich tract
aaattaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattggtgaaattgatgtatgagaaaactgcatttggaaatagttagtatcaggaaattaatgacactgcttaattttctgaccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTTTGTGCTGGCTTGATTGGAGGATTGGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT