1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatattggtgaaattgatgtatgagaaaactgcatttggaaatagttagtatcaggaaattaatgacactgcttaattttctgaccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTTTGTGCTGGCTTGATTGGAGGATTGGGCT
species | Glycine max |
transcript | GLYMA10G06590.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|26058455|gb|CA801369.1|CA801369
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|254327181|gb|GR836790.1|GR836790
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: GGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|192322775|gb|FK014466.1|FK014466
genomic: GGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGGTG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|192328452|gb|FK020726.1|FK020726
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|151403480|gb|EV273290.1|EV273290
genomic: ACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|33390558|gb|CA853753.1|CA853753
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATEST: gi|192328451|gb|FK020725.1|FK020725
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
EST: ATCCTGAGATAACTTATGAG-AAGTTGTCATTGACAATTGCTGCATGATG CTTGTGAAGA-TCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
genomic: ATCCTGAGATAACTTATGAGGAAGTTGTCATTGACAATTGCTGCATGATGgtaatattgg ... ccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTAT
aaatagttagtatcaggaaattaatgacactgcttaattttctgaccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTTTGTGCTGGCTTGATTGGAGGATTGGGCT
ttctgac putative branch site (score: 2)
ttttctgaccttcctc CT-rich tract
aaattaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattggtgaaattgatgtatgagaaaactgcatttggaaatagttagtatcaggaaattaatgacactgcttaattttctgaccttcctcagCTTGTGAAGAATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTTTGTGCTGGCTTGATTGGAGGATTGGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT