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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctagttatccatgtctcaggctgatgcaattatcgtatttcatctgtgagaggccttttaaataactgactctgttcatgtatgtgaatcactgaatcatctcaaatatagATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAG

Basic information

species Glycine max
transcript GLYMA10G05870.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05870.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0040g02130.t01 (Vitis vinifera), 3'ss of exon 3
------------gtaatctagttatccatgtctcaggctgatgcaattatcgtatttcatctgtgagaggccttttaaataactga------ctctgttcatgtatgtgaatcactgaatcatctcaaat-----atagATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAG
            |||       |||| |||| |  |  |       |||| ||| |     | | |      || ||||| | ||        ||  || |||  ||    ||||| |    | ||| ||     |||||||| ||||||||   ||||||||||||||||| |||| | || | ||| || ||||| || ||||||||||| | |||||| || 
gtgactgttcatgtagagattgtatctatgtattggattttgagtcttatggtaatgtggtt-tcattatttttctaaatgagtggaatgctttcaattaatgcttgcagttcacttatatgtttcacatgaatgatagATGGACGATTTGACAGTGAATACTTCCAACAAACTGAAGAGTCTAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAACCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719210|gb|BW679776.1|BW679776
EST:     TGGAGGCTGGGCAGCTTCTGCTTCACGTCCTGAAATTAAGTTTGATTCAG                         ATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAAT
genomic: TGGAGGCTGGGCAGCTTCTGCTTCACGTCCTGAAATTAAGTTTGATTCAGgtaatctagt ... tcaaatatagATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAAT
EST: gi|26048180|gb|CA784745.1|CA784745
EST:     TGGAGGCTGGGCAGCTTCTGCTTCACGTCCTGAAATTAAGTTTGATTCAG                         ATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAAT
genomic: TGGAGGCTGGGCAGCTTCTGCTTCACGTCCTGAAATTAAGTTTGATTCAGgtaatctagt ... tcaaatatagATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAAT
EST: gi|18730524|gb|BM525925.1|BM525925
EST:     CACGTCCTGAAATTAAGTTTGATTCAG                         ATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAAT
genomic: CACGTCCTGAAATTAAGTTTGATTCAGgtaatctagt ... tcaaatatagATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAAT
EST: gi|298198162|gb|HO039701.1|HO039701
EST:     TGGAGGCTGGGCAGCTTCTGCTTCACGTCCTGAAATTAAGTTTGATTCAG                         ATGGGCGATTTGATGATGAATACTT
genomic: TGGAGGCTGGGCAGCTTCTGCTTCACGTCCTGAAATTAAGTTTGATTCAGgtaatctagt ... tcaaatatagATGGGCGATTTGATGATGAATACTT
EST: gi|26048411|gb|CA784901.1|CA784901
EST:     TGGAGGCTGGGCAGCTTCTGCTTCACGTCCTGAAATTAAGTTTGATTCAG                         ATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAAT
genomic: TGGAGGCTGGGCAGCTTCTGCTTCACGTCCTGAAATTAAGTTTGATTCAGgtaatctagt ... tcaaatatagATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaataactgactctgttcatgtatgtgaatcactgaatcatctcaaatatagATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAG
       aactgac  putative branch site (score: 2)
                                        tcatctc  putative PPT
                                             tcaaatata  TA-rich tract