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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttgtaatttactcaaattctattcctctgtactttatttatatctgaagtgatcttttttattaaaattcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAAC

Basic information

species Glycine max
transcript GLYMA10G05850.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991008|gb|BI316681.1|BI316681
EST:     TTGGAGCCCAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAG                         ATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTT
genomic: TTGGAGCCCAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAGgttagtttgt ... taaaattcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTT
EST: gi|6566890|gb|AW234522.1|AW234522
EST:     TTGGAGCCCAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAG                         ATGCAAATGCTNTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTT
genomic: TTGGAGCCCAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAGgttagtttgt ... taaaattcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTT
EST: gi|17022637|gb|BM093671.1|BM093671
EST:     TTGGAGCCCAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAG                         ATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTT
genomic: TTGGAGCCCAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAGgttagtttgt ... taaaattcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctattcctctgtactttatttatatctgaagtgatcttttttattaaaattcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAAC
                                   tcttttttatt  CT-rich tract
               tttatttatatctgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtttgtaatttactcaaattctattcctctgtactttatttatatctgaagtgatcttttttattaaaattcagATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG