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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttttttctgtgtttatctacacttttgagtgtgtgtttgtacacattgtggtttatgatttatgatcttttgatgtggcagGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGATGCATCTGCTAAGAGAGATGTTTATCAGAGTCCTAATGGCCAG

Basic information

species Glycine max
transcript GLYMA10G05610.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31469579|gb|CD411607.1|CD411607
EST:     GCCGCTTACAGAGAGATTGAG
genomic: GCCGCTTACAGAGAGATTGAG
EST: gi|298196414|gb|HO041157.1|HO041157
EST:     GCCGCTTACAGAGAGATTGAG
genomic: GCCGCTTACAGAGAGATTGAG
EST: gi|16341802|gb|BI967397.1|BI967397
EST:     GCCGCTTACAGAGAGATTGAG
genomic: GCCGCTTACAGAGAGATTGAG
EST: gi|193560548|gb|FK521549.1|FK521549
EST:     GCTTACAGAGAGATTGAG
genomic: GCTTACAGAGAGATTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgtgtgtttgtacacattgtggtttatgatttatgatcttttgatgtggcagGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGATGCATCTGCTAAGAGAGATGTTTATCAGAGTCCTAATGGCCAG
                                         ttttgat  putative branch site (score: 4)
                                       tcttttg  CT-rich tract
                         tttatgatttatgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttttttttctgtgtttatctacacttttgagtgtgtgtttgtacacattgtggtttatgatttatgatcttttgatgtggcagGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGATGCATCTGCTAAGAGAGATGTTTATCAGAGTCCTAATGGCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG