1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acccaacataagatgttgtttctgctgattctatgtgatatcttaacatgcatactttgttcaatcatatgcttatacattctcatactttggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACTAAAGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTA
species | Glycine max |
transcript | GLYMA10G04920.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACAAGGAGACGCTATTCTTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTEST: gi|7233057|gb|AW568408.1|AW568408
genomic: AACAAGGAGACGC-A-TC-TTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|208208074|gb|GE003361.1|GE003361
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAACTTCCTCTTCCTGANANCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|6454107|gb|AW184855.1|AW184855
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|208176638|gb|GD979545.1|GD979545
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|7796438|gb|AW781835.1|AW781835
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|14991505|gb|BI317178.1|BI317178
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACAEST: gi|209698517|gb|BW652396.1|BW652396
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACA
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|14258976|gb|BG881884.1|BG881884
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|23057351|gb|BU578025.1|BU578025
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|18710289|gb|BM522491.1|BM522491
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|254313974|gb|GR831603.1|GR831603
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|208292233|gb|GE092067.1|GE092067
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|208043860|gb|GD842342.1|GD842342
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCGG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|6454899|gb|AW185509.1|AW185509
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATT-EST: gi|254316119|gb|GR825928.1|GR825928
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|24205871|gb|BU965124.1|BU965124
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|22927270|gb|BU544409.1|BU544409
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAANNNTTTEST: gi|254316118|gb|GR825927.1|GR825927
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTEST: gi|193316137|gb|FK282665.1|FK282665
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACT
EST: ATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|298164759|gb|HO014404.1|HO014404
genomic: ATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGEST: gi|14011173|gb|BG726104.1|BG726104
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGG
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTEST: gi|193577240|gb|FK536603.1|FK536603
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
EST: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAG ATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
genomic: AGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatga ... tggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTT
acatgcatactttgttcaatcatatgcttatacattctcatactttggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACTAAAGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTA
tcttaac putative branch site (score: 2)
ttatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccaacataagatgttgtttctgctgattctatgtgatatcttaacatgcatactttgttcaatcatatgcttatacattctcatactttggaattaagATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACTAAAGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-cccaaca
- - - - - -gatgttg
- - - - - - - - - - -ctgctga
- - - - - - - - - - - - - - - ctatgtg
- - - - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctc