1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgctactttattttgtttttggtctctttcaatccttttatatagagatatacacaaaaaggggttggttgtttgatgttgaattttccattttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAACACTGGATCGTACGAGTGCTGGTCCA
species | Glycine max |
transcript | GLYMA10G04480.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTEST: gi|17518793|gb|BM187835.1|BM187835
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttttacagGTTTACTTGTGTGAAAAGCT
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAEST: gi|61241640|gb|DN591031.1|DN591031
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATA
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAEST: gi|19347335|gb|BM892215.1|BM892215
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATA
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAEST: gi|15000418|gb|BI321232.1|BI321232
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATA
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAEST: gi|209712883|gb|BW679160.1|BW679160
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATA
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTEST: gi|192308759|gb|FG999784.1|FG999784
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttttacagGTTTACTTGTGT
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAEST: gi|151397308|gb|EV267181.1|EV267181
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATA
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAEST: gi|151409274|gb|EV279082.1|EV279082
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATA
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATA
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATA
agatatacacaaaaaggggttggttgtttgatgttgaattttccattttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAACACTGGATCGTACGAGTGCTGGTCCA
gtttgat putative branch site (score: 5)
ttttccattttttac putative PPT
aattttccatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctactttattttgtttttggtctctttcaatccttttatatagagatatacacaaaaaggggttggttgtttgatgttgaattttccattttttacagGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAACACTGGATCGTACGAGTGCTGGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgttg