1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgtactgtctattgcgtttattgaaaatatttgcattttctctgctatatcacattattttttaataatctgttgctattttatatagGGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG
species | Glycine max |
transcript | GLYMA10G04020.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATG GGAAATGATATGGATTCTTCGAGAGGAEST: gi|193430346|gb|FK393292.1|FK393292
genomic: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGgtgcgtactg ... ttttatatagGGAAATGATATGGATTCTTCGAGAGGA
EST: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATG GGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAAEST: gi|192323181|gb|FK018952.1|FK018952
genomic: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGgtgcgtactg ... ttttatatagGGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAA
EST: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATG GGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAAEST: gi|192298747|gb|FG988613.1|FG988613
genomic: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGgtgcgtactg ... ttttatatagGGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAA
EST: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATG GGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAAEST: gi|31306277|gb|CD391480.1|CD391480
genomic: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGgtgcgtactg ... ttttatatagGGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAA
EST: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATG GGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAA
genomic: GTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGgtgcgtactg ... ttttatatagGGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAA
cattttctctgctatatcacattattttttaataatctgttgctattttatatagGGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG
ttttaat putative branch site (score: 3)
ctatttt putative PPT
acattattttttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtactgtctattgcgtttattgaaaatatttgcattttctctgctatatcacattattttttaataatctgttgctattttatatagGGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG