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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgactcttctttttgctcttctgctcgttcatgttacctacaccaaataaatgtaatgattaaaccatgccttttgtttaaacagGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAA

Basic information

species Glycine max
transcript GLYMA10G02550.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02550.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g15460.2 (Oryza sativa), 3'ss of exon 4
gtttgactcttctttttgctcttctgctcgttcatgttacctacaccaaataaatgtaatgattaaaccatgccttttgtttaa-acagGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAA
|| |||    |||  |      | ||||  |||||   || |        |   | | |  |  | |   ||       |  ||  ||||||||||| || |||||||||||  | ||||| ||||| || |||||||| |   | |||||||||||||||||  ||   | |||     |  || |  
gtgtgaaatctctcgtaaaatat-tgcttattcatac-acttgtttttcctgttt-tgaaaaagagatgttggtacaaataaaatgcagGGTGAGAAGGAGTGCTCCTACTACATGAAAACTGGGCAATGTAAATTTGGAACTACATGTAAATTCCATCATCCGGAATTCGGTGGTGTTCCGATGACCC

upper sequence: GLYMA10G02550.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G036837_T02 (Zea mays), 3'ss of exon 4
gtttgactcttctttttgctcttctgctcgttcatgttacctacaccaaataaatgtaatgattaaaccatgccttttgtttaaacagGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAA
|| |||   ||||  |     || || |  ||    ||    |     | |  |   ||| ||| |  |||   |   ||     ||||||||||||||||||||||||||| | || || ||||| ||||| ||||||    | |||||||| ||||||||  ||  || ||| |   |  || |  
gtatgagaattctcct-atgattgtgtttcttggattttttaagtattattggaaaaaataattga--cattaatgaagt----gcagGGTGAGAAAGAATGCTCCTACTATATGAAGACTGGGCAATGCAAGTTTGGTTCTACATGTAAATTTCATCATCCAGAATTTGGTGGTATTCCGGTGACCC

upper sequence: GLYMA10G02550.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G086994_T01 (Zea mays), 3'ss of exon 4
gtttgactcttctttttgctcttctgctcgttcatgttacctacaccaaataaatgtaatgattaaaccatgccttttgtttaaa--cagGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAA
|| |||   ||||  |      | ||||  ||  |   |  |        ||| |||  |    |||  ||     ||  | |||  ||||||||||||||||||||||||||| | || || ||||| ||||| ||||||    | |||||||| ||||||||  ||  || ||| |   |  |  |  
gtatgagaattctcct-atggatgtgcttctttgtaacatttt-------taactgtttttgggaaaaaatttacattaatgaaatgcagGGTGAGAAAGAATGCTCCTACTATATGAAGACTGGGCAATGCAAGTTTGGTTCTACATGTAAATTTCATCATCCAGAATTTGGTGGTATTCCGGTAACCC

upper sequence: GLYMA10G02550.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G086994_T03 (Zea mays), 3'ss of exon 4
gtttgactcttctttttgctcttctgctcgttcatgttacctacaccaaataaatgtaatgattaaaccatgccttttgtttaaa--cagGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAA
|| |||   ||||  |      | ||||  ||  |   |  |        ||| |||  |    |||  ||     ||  | |||  ||||||||||||||||||||||||||| | || || ||||| ||||| ||||||    | |||||||| ||||||||  ||  || ||| |   |        
gtatgagaattctcct-atggatgtgcttctttgtaacatttt-------taactgtttttgggaaaaaatttacattaatgaaatgcagGGTGAGAAAGAATGCTCCTACTATATGAAGACTGGGCAATGCAAGTTTGGTTCTACATGTAAATTTCATCATCCAGAATTTGGTGGTATTCCG-------

upper sequence: GLYMA10G02550.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G47850.1 (Arabidopsis thaliana), 3'ss of exon 4
gtttgactcttctttttgctcttctgctcgttcatgttacctacaccaaataaatgtaatgattaaaccatgccttttg---tttaaacagGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAA
               |     || |   |  |||||| |  || |  |    | | |   | ||  |  ||   || |    | |    ||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||| ||||||||||| |||||||| ||  |  | ||| 
--------------gtaagctttgtttccactcatgtcaaataaa--aggctagtctcgagtttgcatgatcttttataaactctttgtagGGTGATAACGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAATTTGGTATAACCTGTAAATTTCATCATCCTCAGCCTGCTGGTACTACTGTCCCAC

upper sequence: GLYMA10G02550.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G47850.2 (Arabidopsis thaliana), 3'ss of exon 4
gtttgactcttctttttgctcttctgctcgttcatgttacctacaccaaataaatgtaatgattaaaccatgccttttg---tttaaacagGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAA------------------------------------------------------------------------------
               |     || |   |  |||||| |  || |  |    | | |   | ||  |  ||   || |    | |    ||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||| ||||||||||| |||||||| ||  |  | |||                                                                               
--------------gtaagctttgtttccactcatgtcaaataaa--aggctagtctcgagtttgcatgatcttttataaactctttgtagggtgataacgaatgctcctactatttgaaaacggggcaatgcaaatttggtataacctgtaaatttcatcatcctcagCCTGCTGGTACTACTGTCCCACCACCACCAGCATCTGCACCTCAGTTTTATCCATCGGTGCAGTCACTTATGCCTGACCAGTATGGAGGTCCATCTTCTA

upper sequence: GLYMA10G02550.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0104g01460.t01 (Vitis vinifera), 3'ss of exon 4
------gtttgactcttctttttgctcttctgctcg--ttcatgttacctacaccaaataaatgtaat----gattaaaccatgcctttt-------gttta-----------------aacagGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAA
       ||||  |  |  ||   || ||||  ||   ||| | ||||  |  |   ||   ||||||    || |  ||  | || |||       |||||                 ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||| 
gttgggatttggtttattcttcaccttttctaatcaaattcgttttactaaatcagcatggttgtaatttgggaatggacacttccatttagcttatgtttatgaattggaaattttgcaacagGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAGTTTGGTATAACATGTAAATTCCATCATCCTCAACCAGCTGGCACATCATTGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttacctacaccaaataaatgtaatgattaaaccatgccttttgtttaaacagGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAA
                                       ccttttgttt  CT-rich tract
              aaataaatgtaatgat  TA-rich tract