Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttccgtagttccatagtttttgtttatgcttctactttccccttcttgcggtagagaagtgatataattttacataattcttgtgtagGTTCAGAAATATACCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGACTACTAATTGTGGATTCTCTTTCACTGCCTGGT

Basic information

species Glycine max
transcript GLYMA10G02410.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02410.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 7
gtagttccgtagttccatagtttttgtttatgcttctactttccccttcttgcggtagagaagtgatataattttaca-taattcttgtgtagGTTCAGAAATATACCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGACTACTAATTGTGGATTCTCTTTCACTGCCTGGT
|||   ||    ||   |   |  ||  | ||||| || |||    |  || |  |       | || |||   | || | | |  | | ||||||| |||||||||||||| |||||| | ||||||||||  || ||||||  ||||||||| || ||||| |||||||||  | ||||||||
gtaccaccaccttttttttcatgctgcctgtgctt-tattttttaatcatttctttgattctat-atctaacactccaatgagttctttatagGTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttccccttcttgcggtagagaagtgatataattttacataattcttgtgtagGTTCAGAAATATACCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGACTACTAATTGTGGATTCTCTTTCACTGCCTGGT
                                            ttcttgt  CT-rich tract
                       aagtgatataatttta  TA-rich tract